View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7811_low_12 (Length: 446)

Name: NF7811_low_12
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7811_low_12
NF7811_low_12
[»] chr5 (3 HSPs)
chr5 (278-425)||(41798467-41798614)
chr5 (11-103)||(41798192-41798284)
chr5 (185-241)||(41798374-41798430)
[»] chr8 (1 HSPs)
chr8 (333-373)||(3379949-3379989)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 278 - 425
Target Start/End: Original strand, 41798467 - 41798614
Alignment:
Q  278 tggtagcatatgttgaatcaaatcaaatttaaattttttaaatgttcaaagttagtaccaattccacacgtttcaatcttcttattctacttcatcgtcn 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41798467 tggtagcatatgttgaatcaaatcaaatttaaattttttaaatgttcaaagttagtaccaattccacacgtttcaatcttcttattctacttcatcgtct 41798566  T
Q  378 nnnnnnnattctctatttcctcattcttgtatcatccctagagtgctc 425  Q
           ||||| |||||||||||||||||||||||||||||||||||    
T  41798567 tttttttattctttatttcctcattcttgtatcatccctagagtgctc 41798614  T

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Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 41798192 - 41798284
Alignment:
Q  11 ttggataagttcatatatgtgtgtatttactaagcaggtaacataatccaaagattttgaactgtccacgagtatatcatcgtatctatgata 103  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41798192 ttggataagttcatatatgtgtgtatttactaagcaggtaagataatccaaagattttgaactgtccacgagtatatcatcgtatctatgata 41798284  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 41798374 - 41798430
Alignment:
Q  185 caacaaaagttcatcacattcaagattattccatttgttcatgtttgtgtttccttc 241  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41798374 caacaaaagttcatcacattcaagattattccatttcttcatgtttgtgtttccttc 41798430  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 373
Target Start/End: Original strand, 3379949 - 3379989
Alignment:
Q  333 taccaattccacacgtttcaatcttcttattctacttcatc 373  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3379949 taccaattccacacgtttcaatcttcttattctacttcatc 3379989  T

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