View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7811_low_13 (Length: 433)
Name: NF7811_low_13
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 9 - 415
Target Start/End: Original strand, 42223141 - 42223547
Alignment:
| Q |
9 |
tattattctctgtgtaaggggctttttggaatgtaaattttttcccacccacctcaacatcaaagtcgtgaataacgtattctataacataatgtgctcc |
108 |
Q |
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| T |
42223141 |
tattattctctgtgtaaggggctttttggaatgtaaattttttcccacccatctcaacatcaaagtcgtgaataacgtattctataacataatgtgctcc |
42223240 |
T |
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| Q |
109 |
tgaagactgttacttggtaaataacaattaatatggtgaaatgaaattgactaagaagatatttataaattaaaattctggtgggtggatgcgatctgat |
208 |
Q |
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| T |
42223241 |
tgaagactgttacttggtaaataacaattaatatggtgaaatgaaattgactaagaagatatttataaattaaaattctggtgggtggatgtgatctgat |
42223340 |
T |
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| Q |
209 |
tacatttcagcccaaaagatgcaagtgcaactctgtaagagaagtgtgctgcttaataaacttcaggcattgctttaggcaatgataaaattgcatcttt |
308 |
Q |
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| T |
42223341 |
tacatttcagcccaaaagatgcaagtgcaactctgtaagagaagtgtgctgcttaataaacttcaggcattgctttaggcaatgataaaattgcatcttt |
42223440 |
T |
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| Q |
309 |
aaaaacaaaacatcccaacaaggttggatggaaaacgaaagatgataaggataaattagcatttcccataattttatagtagcaatgatgaaatgggagg |
408 |
Q |
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| T |
42223441 |
aaaaacaaaacatcccaacaagattggatggaaaacgaaaaatgataaggataaattagcatttcccataattttatagtagcaatgatgaaatgggagg |
42223540 |
T |
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| Q |
409 |
ttagacg |
415 |
Q |
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| T |
42223541 |
ttagacg |
42223547 |
T |
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