View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7811_low_14 (Length: 432)
Name: NF7811_low_14
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 425
Target Start/End: Complemental strand, 35035384 - 35034976
Alignment:
| Q |
17 |
aaaagtttcaactcctttgtaacacttcatgtcaaaaagttgcttgtctaaccaaatcannnnnnnncttagcaatatgtttttgtcgcttcatcctcct |
116 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| |
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| T |
35035384 |
aaaagtttcaactcctttgtaacacttcatttcaaaaatttgcttgtctaaccaaatcattttttttcttaggaatatgtttttatcgcttcatcctcct |
35035285 |
T |
|
| Q |
117 |
aagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagctctaaaccctttatatcaaacatca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035284 |
aagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagctctaaaccctttatatcaaacatca |
35035185 |
T |
|
| Q |
217 |
cctaaaaacttagatttgttcttcacatccgtttcagccaccacagtttcaagcatgtccacggttgaaatgcaaattttttctaaccctcaattaatca |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
35035184 |
cctaaaaacttagatttgttcttcacatccgtttcatccaccacagtttcaagcatgtccacggttgaaatggaatttttttctaaccctcaattaatca |
35035085 |
T |
|
| Q |
317 |
tcattaccatattaatgttcataggtggtgaaatctttacctccatgttagggctttatttcattagattaaagctcaaaactgatctaggtaaaatcga |
416 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035084 |
tcattaccatcttaatgttcataggtggtgaaatctttacctccatgttagggctttatttcattagattaaagctcaaaactgatctaggtaaaatcga |
35034985 |
T |
|
| Q |
417 |
ttcttctca |
425 |
Q |
| |
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||||||||| |
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|
| T |
35034984 |
ttcttctca |
35034976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 425
Target Start/End: Complemental strand, 34974657 - 34974252
Alignment:
| Q |
17 |
aaaagtttcaactcctttgtaacacttcatgtcaaaaagttgcttgtctaaccaaatcannnnnnnncttagcaatatgtttttgtcgcttcatcctcct |
116 |
Q |
| |
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||||||| |||| |||||||| ||| ||| ||||| | |||| |||| |||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
34974657 |
aaaagttgcaacacctttgtagcacatcacttcaaagaattgcatgtcaaaccaaatcaatttttttcttagcagcatgtttttgtcgcttcatcctcct |
34974558 |
T |
|
| Q |
117 |
aagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagctctaaaccctttatatcaaacatca |
216 |
Q |
| |
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||||||||| |||||||| ||||||||| ||||||||| ||| |||| ||| || |||||||||||||||| |||||| |||||| | ||| || |
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| T |
34974557 |
aagagcaaacccattatgggttcaaattgtatatttcacatctctttcaactttgggttttggatttctcaaagttctaaaacctttaggtgaaa---ca |
34974461 |
T |
|
| Q |
217 |
cctaaaaacttagatttgttcttcacatccgtttcagccaccacagtttcaagcatgtccacggttgaaatgcaaattttttctaaccctcaattaatca |
316 |
Q |
| |
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|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34974460 |
cctaaaaatttagatttgttcttcacatccatttcagccaccacagtttcaagcatgtccacggttgaaatgcaaaatttttctaaccctcaattaatca |
34974361 |
T |
|
| Q |
317 |
tcattaccatattaatgttcataggtggtgaaatctttacctccatgttagggctttatttcattagattaaagctcaaaactgatctaggtaaaatcga |
416 |
Q |
| |
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|||||||||| ||||||||||||||||||||| | ||||| || ||| |||| |||| ||||||||| | || |||||||||||| |||| |||||| | |
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| T |
34974360 |
tcattaccatcttaatgttcataggtggtgaagtttttacatcaatggtaggactttttttcattaggtcaaggctcaaaactgagctagataaaattgc |
34974261 |
T |
|
| Q |
417 |
ttcttctca |
425 |
Q |
| |
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||||||||| |
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|
| T |
34974260 |
ttcttctca |
34974252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 93 - 415
Target Start/End: Complemental strand, 34956119 - 34955800
Alignment:
| Q |
93 |
atgtttttgtcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagct |
192 |
Q |
| |
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|||||| | ||| ||||||||||||||| |||| ||| |||||||||||||| |||||||||| || ||||| ||| || |||||||||||||||||| |
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| T |
34956119 |
atgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagct |
34956020 |
T |
|
| Q |
193 |
ctaaaccctttatatcaaacatcacctaaaaacttagatttgttcttcacatccgtttcagccaccacagtttcaagcatgtccacggttgaaatgcaaa |
292 |
Q |
| |
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||||| || ||| ||||||| | ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| || |
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| T |
34956019 |
ctaaaacccttaggtcaaacacaa---aaaaatttagatttgttcttcacatccgtttcatccaccacagtttcaagcatggtcacggttgaaatgggaa |
34955923 |
T |
|
| Q |
293 |
ttttttctaaccctcaattaatcatcattaccatattaatgttcataggtggtgaaatctttacctccatgttagggctttatttcattagattaaagct |
392 |
Q |
| |
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||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| || || |||| |||| ||||||||| | || ||| |
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| T |
34955922 |
ttttttctaacactcaattaatcatcattaccatcttaatgttcataggtggtgaagtctttacatcattggtaggactttttttcattaggtcaaggct |
34955823 |
T |
|
| Q |
393 |
caaaactgatctaggtaaaatcg |
415 |
Q |
| |
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||||| |||| ||| |||||||| |
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|
| T |
34955822 |
caaaattgatttagataaaatcg |
34955800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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