View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7811_low_16 (Length: 431)
Name: NF7811_low_16
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 40984080 - 40984499
Alignment:
| Q |
1 |
atcgacagatgagagcttaatgctagaggtacaagcacggttctctatcaagaaaacaaattttccactttctctgtcattaaatgtgtccaaagcagct |
100 |
Q |
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| T |
40984080 |
atcgacagatgagagcttaatgctagaggtacaagcacggttctctatcaagaaaacaaattttccactttctctgtcattaaatgtgtccaaagcagct |
40984179 |
T |
|
| Q |
101 |
tgattctttgaaggaatgtaatccttgcaatatcgtacatagcaatcttctccaaatctatgacagagaacatcgtccaaaatatctccaattgatctag |
200 |
Q |
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| T |
40984180 |
tgattctttgaaggaatgtaatccttgcaatatcgtacatagcaatcttctccaaatctatgacagagaacatcgtccaaaatatctccaattgatctag |
40984279 |
T |
|
| Q |
201 |
aaccacaactagactgcagtttttataaaattt-nnnnnnnnnntgaggaaagaaagaaacaactaattaaatccatgagaatataaaaaatacatcagt |
299 |
Q |
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| T |
40984280 |
aaccacaactagactgcagtttttataaaatttaaaaaaaaaaatgaggaaagaaagaaacaactaattaaatccatgagaatataaaaaatacatcagt |
40984379 |
T |
|
| Q |
300 |
ctttaacc---aagataattgaccacagtgtgaagcatagttttgtgagaacaggaattctcatatctctagcccttttacaggaattgcaaatgataac |
396 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40984380 |
ctttaaccaagaagataattgaccacaatgtgaagcatagttttgtgagaacaggaattctcatatctctagcccttttacaggaattgcaaatgataac |
40984479 |
T |
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| Q |
397 |
aaaaagaagccagtaaataa |
416 |
Q |
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| T |
40984480 |
aaaaagaagccagtaaataa |
40984499 |
T |
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