View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7811_low_18 (Length: 398)

Name: NF7811_low_18
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7811_low_18
NF7811_low_18
[»] chr4 (6 HSPs)
chr4 (1-376)||(41943025-41943401)
chr4 (87-299)||(10344738-10344962)
chr4 (36-152)||(3295290-3295407)
chr4 (48-149)||(31519152-31519254)
chr4 (1-87)||(10336091-10336177)
chr4 (322-376)||(10344965-10345020)
[»] chr8 (5 HSPs)
chr8 (1-376)||(42077479-42077832)
chr8 (1-156)||(9818185-9818340)
chr8 (1-152)||(21231856-21232007)
chr8 (36-150)||(9881085-9881200)
chr8 (51-151)||(24423220-24423320)
[»] chr3 (6 HSPs)
chr3 (2-376)||(15990178-15990566)
chr3 (48-150)||(52641386-52641489)
chr3 (1-151)||(40888698-40888848)
chr3 (40-149)||(29453643-29453755)
chr3 (47-144)||(19544714-19544811)
chr3 (60-156)||(11650592-11650689)
[»] chr7 (7 HSPs)
chr7 (1-156)||(10530148-10530303)
chr7 (1-154)||(9745118-9745271)
chr7 (36-150)||(13167881-13167996)
chr7 (1-152)||(29587570-29587723)
chr7 (40-147)||(8311731-8311839)
chr7 (45-136)||(46002795-46002887)
chr7 (51-145)||(31211093-31211188)
[»] chr1 (3 HSPs)
chr1 (1-145)||(31654582-31654726)
chr1 (1-150)||(13380229-13380378)
chr1 (1-118)||(51443533-51443650)
[»] chr2 (7 HSPs)
chr2 (36-166)||(27977193-27977323)
chr2 (36-166)||(28063721-28063851)
chr2 (36-135)||(29046603-29046702)
chr2 (36-150)||(28497235-28497349)
chr2 (1-149)||(16131089-16131237)
chr2 (77-148)||(22403747-22403819)
chr2 (36-69)||(22403839-22403872)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-141)||(107863-108003)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-148)||(2023-2170)
[»] scaffold0259 (1 HSPs)
scaffold0259 (36-156)||(2545-2666)
[»] chr5 (1 HSPs)
chr5 (77-146)||(18927185-18927255)


Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 41943025 - 41943401
Alignment:
Q  1 tcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatca 100  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||    
T  41943025 tcaccaattcttataattagcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacaaca 41943124  T
Q  101 taatctatcattttcatttaaacatggtcaagactagagcccttaccttagatgctctccttcctagccgaataacctctaaatttatacgcatcattct 200  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41943125 taatctatcattttcatttaaacatggtcaagactagagcctttgccttagatgctctccttcctagccgaataacctctaaatttatacgcatcattct 41943224  T
Q  201 ttgctccgcaaacccaaatccaatcgaccaggaaaaccacaaaaacatgcttctcaaatgtgttgaaggctataaagcggtggatgtagttatcggcatc 300  Q
    | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  41943225 tcgctccgcaaactcaaatccaatcgaccaggaaaaccacaaaaacatgcttctcaaatgtgttgaaggctataaaggggtggatgtagttatcggcata 41943324  T
Q  301 tgaaatcttaggtgaccattagagggatagagaattgagagggtttatttttc-ttgcttctaaaagtgatagatgg 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||| ||||    
T  41943325 tgaaatcttaggtgaccattagagggatagagaattgagagggtttattattcttttcttctaaaagtgatacatgg 41943401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 87 - 299
Target Start/End: Original strand, 10344738 - 10344962
Alignment:
Q  87 caaattcaacatcataatctatcattttcatttaaacatggtcaagactagagcccttac--------cttagatgctctccttcctagccgaataacct 178  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||        ||||||||||||||||||||  ||||||||||    
T  10344738 caaattcaacatcataatctatcattttcatttaaaaatggtcaagactagaacccttaccttagatgcttagatgctctccttcctaatcgaataacct 10344837  T
Q  179 ctaaatttatacgcatcattctttgctccgcaaacccaaatccaatcgaccaggaaaaccaca--aaaacatgc--ttctcaaatgtgttgaaggctata 274  Q
     ||||||||||||||||| |||| |||| || ||| ||| |||||||||||| ||  ||||||  |||||||||  || ||  ||| |||||||||||||    
T  10344838 ttaaatttatacgcatcactcttcgctctgctaactcaactccaatcgaccaagacgaccacaagaaaacatgcttttatcccatgcgttgaaggctata 10344937  T
Q  275 aagcggtggatgtagttatcggcat 299  Q
    |   ||||||| |||||||||||||    
T  10344938 agagggtggatatagttatcggcat 10344962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 36 - 152
Target Start/End: Complemental strand, 3295407 - 3295290
Alignment:
Q  36 taataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagac 134  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||| |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  3295407 taataaaacacaataaatcttttctctcatccattaaatcaagaagcatatcaaattcaacatcataatctatcagtttcacttaaatcatggtcaagac 3295308  T
Q  135 tagagcccttaccttaga 152  Q
    |||||| |||||||||||    
T  3295307 tagagctcttaccttaga 3295290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 31519152 - 31519254
Alignment:
Q  48 ataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagcccttac 146  Q
    ||||||||||||||||||| ||| | |  ||||| |||||||||||||| |||||| |||||||||||| ||||| ||||||||||||||||||| ||||    
T  31519152 ataaatcttttcactcatctattgagtcaagaagcatatcaaattcaacgtcataacctatcattttcaattaaatcatggtcaagactagagcctttac 31519251  T
Q  147 ctt 149  Q
    |||    
T  31519252 ctt 31519254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 10336091 - 10336177
Alignment:
Q  1 tcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatc 87  Q
    |||||||||||||||||| ||||||||        |||||||||||| ||||||||||||||||||||||||||  ||||| |||||    
T  10336091 tcaccaattcttataatttgcaactacaagaaaaataataaaacacactaaatcttttcactcatccattaaatcaagaagcatatc 10336177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 376
Target Start/End: Original strand, 10344965 - 10345020
Alignment:
Q  322 gagggatagagaattgagagggtttatttttc-ttgcttctaaaagtgatagatgg 376  Q
    |||||||||||||||||||||||||||| ||| || ||||||||||||||| ||||    
T  10344965 gagggatagagaattgagagggtttattattcttttcttctaaaagtgatacatgg 10345020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 42077479 - 42077832
Alignment:
Q  1 tcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatca 100  Q
    ||||||||||||||||||| |||||||        |||||||||||||||||||||||||||||||||||||||  |||||  |||||||||||||||||    
T  42077479 tcaccaattcttataattaacaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcgtatcaaattcaacatca 42077578  T
Q  101 taatctatcattttcatttaaacatggtcaagactagagcccttaccttagatgctctccttcctagccgaataacctctaaatttatacgcatcattct 200  Q
    |||||||||||| ||||||||||||||||||||||||| ||| |||                      ||||||||||||||||||||||||||||||||    
T  42077579 taatctatcattctcatttaaacatggtcaagactagaacccctac----------------------cgaataacctctaaatttatacgcatcattct 42077656  T
Q  201 ttgctccgcaaacccaaatccaatcgaccaggaaaaccacaaaaacatgcttctcaaatgtgttgaaggctataaagcggtggatgtagttatcggcatc 300  Q
    |  |||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||     
T  42077657 tcactccgcaaactcaaattcaatcgaccaggaaaaccacaaaaacat-cttctcaaatgtgttgaaggctataaagcggtggatgtagttatcgacata 42077755  T
Q  301 tgaaatcttaggtgaccattagagggatagagaattgagagggtttatttttc-ttgcttctaaaagtgatagatgg 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||| ||||    
T  42077756 tgaaatcttaggtgaccattagagggatagagaattgagagggtttattattcttttcttctaaaagtgatacatgg 42077832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 9818185 - 9818340
Alignment:
Q  1 tcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatca 100  Q
    |||||||||||||||||||||||||||        ||||||||||| |||||||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  9818185 tcaccaattcttataattagcaactacaagaaaaataataaaacacgataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatca 9818284  T
Q  101 taatctatcattttcatttaaacatggtcaagactagagcccttaccttagatgct 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9818285 taatctatcattttcatttaaacatggtcaagactagagcccttaccttagatgct 9818340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 21231856 - 21232007
Alignment:
Q  1 tcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatca 100  Q
    |||||||||| |||||||| |||||||        |||||||||| ||||||||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  21231856 tcaccaattcatataattatcaactacaagaaaattaataaaacataataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatca 21231955  T
Q  101 taatctatcattttcatttaaacatggtcaagactagagcccttaccttaga 152  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  21231956 taatctatcattttcatttaaacacggtcaagactagagccattaccttaga 21232007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 150
Target Start/End: Complemental strand, 9881200 - 9881085
Alignment:
Q  36 taataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatt-taaacatggtcaagac 134  Q
    |||||||||| | |||||||||||||||||||||| |||  | ||| |||||||||| || |||||||||||| |||||||||  ||||||| |||||||    
T  9881200 taataaaacatagtaaatcttttcactcatccattgaatcgataagcatatcaaatttaagatcataatctattattttcattcaaaacatgatcaagac 9881101  T
Q  135 tagagcccttacctta 150  Q
    || |||||||||||||    
T  9881100 tatagcccttacctta 9881085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 24423320 - 24423220
Alignment:
Q  51 aatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagcccttacctt 149  Q
    ||||| |||||||||||| | |||| ||||| |||  |||||||| ||||||| |||||||||||| ||||| ||||||||||||||| | |||||||||    
T  24423320 aatctcttcactcatccaatgaata-agaagcatacaaaattcaatatcataaactatcattttcagttaaatcatggtcaagactagggtccttacctt 24423222  T
Q  150 ag 151  Q
    ||    
T  24423221 ag 24423220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 2 - 376
Target Start/End: Original strand, 15990178 - 15990566
Alignment:
Q  2 caccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcat 101  Q
    |||||||||||||||||| |||||||        |||||||||| ||||| ||||||||||||||||||||||  ||||| |||||||||||||| ||||    
T  15990178 caccaattcttataattatcaactacaagaaaattaataaaacataataattcttttcactcatccattaaatcaagaagcatatcaaattcaacgtcat 15990277  T
Q  102 aatctatcattttcatttaaa-catggtcaagactagagcccttac--------cttagatgctctccttcctagccgaataacctctaaatttatacgc 192  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||        ||||||||||||||||| ||| |||||||||| ||||| |||||||    
T  15990278 aatctatcattttcagttaaatcatggtcaagactagagcccttaccttagatacttagatgctctccttcttagtcgaataacctttaaatctatacgc 15990377  T
Q  193 atcattctttgctccgcaaacccaaatccaatcgaccaggaaaaccaca--aaaacatgc--ttctcaaatgtgttgaaggctataa-agcggtggatgt 287  Q
    |||| |||| |||| || ||| ||| || ||||||||||||  | ||||  |||||||||  || ||  ||| ||| |||||||||| ||| |||||| |    
T  15990378 atcactcttcgctctgctaactcaactcgaatcgaccaggacgatcacaagaaaacatgcttttatcccatgcgttcaaggctataagagc-gtggatat 15990476  T
Q  288 agttatcggcatctgaaatcttaggtgaccattagagggatagagaattgagagggtttatttttc-ttgcttctaaaagtgatagatgg 376  Q
    | |||||| ||| |||||||||| |||||||||||||||||||||||||||||||||| ||| ||| || ||||||||||||||| ||||    
T  15990477 atttatcgacatatgaaatcttatgtgaccattagagggatagagaattgagagggttaattattcttttcttctaaaagtgatacatgg 15990566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 48 - 150
Target Start/End: Original strand, 52641386 - 52641489
Alignment:
Q  48 ataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagcccttac 146  Q
    ||||||||||||||||||||||| | |  ||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  52641386 ataaatcttttcactcatccattgagtcaagaagcatatcaaattcaacatcataatctatcattttcaattaaatcatggtcaaaactagagcccttac 52641485  T
Q  147 ctta 150  Q
    ||||    
T  52641486 ctta 52641489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 40888698 - 40888848
Alignment:
Q  1 tcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatca 100  Q
    |||||||||| |||||||| |||||||        |||||||| | ||||||||||||||||||||||| ||  | ||||| |||| ||||||||| |||    
T  40888698 tcaccaattcatataattatcaactacaagaaaattaataaaatataataaatcttttcactcatccatgaatca-agaagcatattaaattcaacgtca 40888796  T
Q  101 taatctatcattttcatttaaa-catggtcaagactagagcccttaccttag 151  Q
    |||||||||||||||| ||||| ||||| ||||||||| |||||||||||||    
T  40888797 taatctatcattttcaattaaatcatggccaagactagggcccttaccttag 40888848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 29453755 - 29453643
Alignment:
Q  40 aaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatc----attttcatttaaacatggtcaagact 135  Q
    |||||| ||||||||||||||||||||||| ||  | ||||| |||||||||||||  ||||||||||||    |||||||||||||||||||||| |||    
T  29453755 aaaacataataaatcttttcactcatccatgaatca-agaagcatatcaaattcaatgtcataatctatctatcattttcatttaaacatggtcaaaact 29453657  T
Q  136 agagcccttacctt 149  Q
    |||| |||||||||    
T  29453656 agagtccttacctt 29453643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 19544714 - 19544811
Alignment:
Q  47 aataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcattta-aacatggtcaagactagagccctt 144  Q
    |||||||||||||||||||||||  |||  | ||| ||||||| ||||||||||||| |||||| ||||||||| | |||| ||| |||||||||||||    
T  19544714 aataaatcttttcactcatccatcgaatcaataagcatatcaa-ttcaacatcataacctatcactttcatttagatcatgatcatgactagagccctt 19544811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 11650592 - 11650689
Alignment:
Q  60 actcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagcccttaccttagatgct 156  Q
    ||||||| ||| |||  ||||| ||||||||||||| |||| || | || |||||| |||||| |||||| ||||||| ||||||||||||| |||||    
T  11650592 actcatcaattgaatcaagaagcatatcaaattcaatatcacaaccaattattttcttttaaatcatggttaagactatagcccttaccttatatgct 11650689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 10530148 - 10530303
Alignment:
Q  1 tcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatca 100  Q
    |||||||||||||||||||||||||||        ||||||||||| |||||||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  10530148 tcaccaattcttataattagcaactacaagaaaaataataaaacacgataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatca 10530247  T
Q  101 taatctatcattttcatttaaacatggtcaagactagagcccttaccttagatgct 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10530248 taatctatcattttcatttaaacatggtcaagactagagcccttaccttagatgct 10530303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 9745271 - 9745118
Alignment:
Q  1 tcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatca 100  Q
    |||||||||| |||||||| |||||||        |||||||||||||||||| |||||||||||||||| |||  ||||| ||||||||||||||||||    
T  9745271 tcaccaattcatataattatcaactacaagaaaaataataaaacacaataaatattttcactcatccattgaatcaagaagcatatcaaattcaacatca 9745172  T
Q  101 taatctatcattttcatttaaacatggtcaagactagagcccttaccttagatg 154  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  9745171 taatctatcattttcctttaaacatggtcaagactagagcccttaccttggatg 9745118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 36 - 150
Target Start/End: Complemental strand, 13167996 - 13167881
Alignment:
Q  36 taataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagac 134  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  13167996 taataaaacacaataaatcttttccctcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcacttaaatcatggtcaagac 13167897  T
Q  135 tagagcccttacctta 150  Q
    ||||||||||||||||    
T  13167896 tagagcccttacctta 13167881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 29587723 - 29587570
Alignment:
Q  1 tcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatctttt-cactcatccattaaatatagaagtatatcaaattcaacatc 99  Q
    |||||||||| |||||||| |||||||        |||||||||| |||||||||||| ||||||||||||||||  ||||| |||||||||||||||||    
T  29587723 tcaccaattcatataattatcaactacaagaaaattaataaaacataataaatctttttcactcatccattaaatcaagaagcatatcaaattcaacatc 29587624  T
Q  100 ataatctatcattttcatttaaa-catggtcaagactagagcccttaccttaga 152  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  29587623 ataatctatcattttcattcaaatcatggtcaagactagagcccttaccttaga 29587570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 8311839 - 8311731
Alignment:
Q  40 aaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagactaga 138  Q
    |||||| ||||||||||||||| |||||||  |||  ||||| || ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||    
T  8311839 aaaacataataaatcttttcacccatccatcgaatcaagaagcatgtcaaattcaacatcataatctattattttcagttaaatcatggtcaagactaga 8311740  T
Q  139 gcccttacc 147  Q
    || ||||||    
T  8311739 gcacttacc 8311731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 46002795 - 46002887
Alignment:
Q  45 acaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagacta 136  Q
    ||||| |||||||||||||||||||| |||  ||||| ||||||||||||| |||| || |||| ||||||||||||| |||| |||||||||    
T  46002795 acaattaatcttttcactcatccattgaatcaagaagcatatcaaattcaatatcacaacctattattttcatttaaatcatgatcaagacta 46002887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 31211188 - 31211093
Alignment:
Q  51 aatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagccctta 145  Q
    ||||| ||||| |||| |||||||  ||||| |||||||||| || ||||||| |||| |||||||| || | |||| ||||||||||||||||||    
T  31211188 aatctcttcacgcatctattaaatcaagaagcatatcaaatttaatatcataacctattattttcatctagatcatgatcaagactagagccctta 31211093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 31654582 - 31654726
Alignment:
Q  1 tcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatca 100  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||  ||||| ||||||||| ||||||||    
T  31654582 tcaccaattcttataattagcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaatccaacatca 31654681  T
Q  101 taatctatcattttcatttaaacatggtcaagactagagccctta 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  31654682 taatctatcattttcatttaaacatggtcaagactagagccctta 31654726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 13380229 - 13380378
Alignment:
Q  1 tcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatca 100  Q
    |||||||||| |||||||| |||||||        |||||||||| ||||||||||||||||||||||| ||  | |||||||||||||||||||| |||    
T  13380229 tcaccaattcatataattatcaactacaagaaaattaataaaacataataaatcttttcactcatccatgaatca-agaagtatatcaaattcaacgtca 13380327  T
Q  101 taatctatcattttcatttaaa-catggtcaagactagagcccttacctta 150  Q
    ||| |||||||||||| ||||| |||||||||||||||| |||||||||||    
T  13380328 taacctatcattttcacttaaatcatggtcaagactagaacccttacctta 13380378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 51443533 - 51443650
Alignment:
Q  1 tcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatca 100  Q
    |||||||||| |||||||| |||||||        |||||||||| ||||||||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  51443533 tcaccaattcatataattatcaactacaagaaaattaataaaacataataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatca 51443632  T
Q  101 taatctatcattttcatt 118  Q
    ||||||||||||||||||    
T  51443633 taatctatcattttcatt 51443650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 9e-49; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 36 - 166
Target Start/End: Original strand, 27977193 - 27977323
Alignment:
Q  36 taataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaacatggtcaagact 135  Q
    |||| ||||| ||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27977193 taatgaaacataataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaacatggttaagact 27977292  T
Q  136 agagcccttaccttagatgctctccttccta 166  Q
    ||||||||||||||||| ||| |||||||||    
T  27977293 agagcccttaccttagacgctttccttccta 27977323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 36 - 166
Target Start/End: Original strand, 28063721 - 28063851
Alignment:
Q  36 taataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaacatggtcaagact 135  Q
    |||| ||||| ||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28063721 taatgaaacataataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaacatggttaagact 28063820  T
Q  136 agagcccttaccttagatgctctccttccta 166  Q
    ||||||||||||||||| ||| |||||||||    
T  28063821 agagcccttaccttagacgctttccttccta 28063851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 29046603 - 29046702
Alignment:
Q  36 taataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaacatggtcaagact 135  Q
    |||||||| ||||||||| |||||| |||||||||||||  || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29046603 taataaaatacaataaatattttcaatcatccattaaatcaaggagcatatcaaattcaacatcataatctatcattttcatttaaacatggtctagact 29046702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 150
Target Start/End: Original strand, 28497235 - 28497349
Alignment:
Q  36 taataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagac 134  Q
    |||||||||| ||||||||||||||||||| ||| ||  | ||||| || || ||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  28497235 taataaaacataataaatcttttcactcattcatgaatca-agaagcatgtcgaattcaacatcataacctatcattttcaattaaatcatggtcaagac 28497333  T
Q  135 tagagcccttacctta 150  Q
    ||||||||||||||||    
T  28497334 tagagcccttacctta 28497349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 16131089 - 16131237
Alignment:
Q  1 tcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatca 100  Q
    |||||||||| |||||||| |||||||        |||||||| | | |||||||||||||||||| || ||  | ||||| || || |||||| |||||    
T  16131089 tcaccaattcatataattatcaactacaaaaaaattaataaaatatagtaaatcttttcactcatctatgaatca-agaagcatgtcgaattcagcatca 16131187  T
Q  101 taatctatcattttcatttaaac-atggtcaagactagagcccttacctt 149  Q
    ||| |||||||||||| |||||| ||||||||||||||||||||||||||    
T  16131188 taacctatcattttcaattaaaccatggtcaagactagagcccttacctt 16131237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 22403819 - 22403747
Alignment:
Q  77 agaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagcccttacct 148  Q
    ||||| |||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||||||||||    
T  22403819 agaagcatatcaaattcaacatcataatctattattttcagttaaatcatggtaaagactagagcccttacct 22403747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 22403872 - 22403839
Alignment:
Q  36 taataaaacacaataaatcttttcactcatccat 69  Q
    |||||||||| |||||||||||||||||||||||    
T  22403872 taataaaacataataaatcttttcactcatccat 22403839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 108003 - 107863
Alignment:
Q  1 tcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatca 100  Q
    |||||||||||||||||||||||||||        |||||||| ||||||||||||||||||||||||||||||  || || ||||||||||||||||||    
T  108003 tcaccaattcttataattagcaactacaacaaaaataataaaatacaataaatcttttcactcatccattaaatcaaggagcatatcaaattcaacatca 107904  T
Q  101 taatctatcattttcatttaaacatggtcaagactagagcc 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  107903 taatctatcattttcatttaaacatggtcaagactagagcc 107863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 2170 - 2023
Alignment:
Q  1 tcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatca 100  Q
    |||||||||| |||||||| |||||||        |||||||||| ||||||||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  2170 tcaccaattcatataattatcaactacaagaaaattaataaaacataataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatca 2071  T
Q  101 taatctatcattttcatttaaacatggtcaagactagagcccttacct 148  Q
    ||||||||  |||||||||||| |||||||||||||||||||||||||    
T  2070 taatctattgttttcatttaaatatggtcaagactagagcccttacct 2023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 2545 - 2666
Alignment:
Q  36 taataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagac 134  Q
    |||||||||||||||||||||||||||||||||||||||  ||||| || |||||||||||||||||| |||||||||||| ||||| ||||||||| ||    
T  2545 taataaaacacaataaatcttttcactcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttcaattaaatcatggtcaaaac 2644  T
Q  135 tagagcccttaccttagatgct 156  Q
    ||||||||||||||||||||||    
T  2645 tagagcccttaccttagatgct 2666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 18927185 - 18927255
Alignment:
Q  77 agaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagcccttac 146  Q
    ||||| |||||||||||||| |||||| |||| |||||||| ||||  ||||||||||| |||||||||||    
T  18927185 agaagcatatcaaattcaacttcataacctattattttcatctaaataatggtcaagacaagagcccttac 18927255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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