View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7811_low_2 (Length: 619)

Name: NF7811_low_2
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7811_low_2
NF7811_low_2
[»] chr3 (10 HSPs)
chr3 (1-603)||(10877469-10878062)
chr3 (189-296)||(43445505-43445612)
chr3 (189-320)||(7320133-7320263)
chr3 (211-310)||(53589986-53590085)
chr3 (192-339)||(50426013-50426160)
chr3 (217-308)||(17508781-17508872)
chr3 (230-307)||(51160944-51161021)
chr3 (143-189)||(53590463-53590509)
chr3 (143-187)||(43445133-43445177)
chr3 (143-176)||(7321199-7321232)
[»] chr8 (11 HSPs)
chr8 (189-371)||(15243518-15243700)
chr8 (189-374)||(12607975-12608162)
chr8 (192-325)||(12563321-12563453)
chr8 (189-304)||(1758589-1758704)
chr8 (216-296)||(12597097-12597177)
chr8 (189-307)||(36128147-36128261)
chr8 (189-279)||(28932223-28932313)
chr8 (143-188)||(15243150-15243195)
chr8 (143-188)||(23589609-23589654)
chr8 (143-187)||(1759019-1759063)
chr8 (143-187)||(12562951-12562995)
[»] chr1 (10 HSPs)
chr1 (183-339)||(39997439-39997595)
chr1 (189-369)||(16824012-16824192)
chr1 (189-370)||(11075885-11076066)
chr1 (189-323)||(8266791-8266925)
chr1 (217-338)||(18565921-18566042)
chr1 (189-370)||(3620795-3620969)
chr1 (189-320)||(9427761-9427892)
chr1 (189-306)||(2887592-2887710)
chr1 (143-186)||(2887224-2887267)
chr1 (258-338)||(43684336-43684416)
[»] scaffold0013 (1 HSPs)
scaffold0013 (189-339)||(54699-54849)
[»] chr7 (13 HSPs)
chr7 (189-371)||(27046059-27046241)
chr7 (190-375)||(10328870-10329055)
chr7 (189-369)||(5464468-5464648)
chr7 (211-373)||(5949473-5949635)
chr7 (189-371)||(12501706-12501888)
chr7 (189-368)||(12527340-12527519)
chr7 (230-339)||(41029397-41029506)
chr7 (264-374)||(13278638-13278748)
chr7 (238-371)||(23810075-23810208)
chr7 (189-295)||(25828380-25828485)
chr7 (229-322)||(31443626-31443719)
chr7 (143-183)||(12501645-12501685)
chr7 (143-183)||(12527279-12527319)
[»] chr2 (8 HSPs)
chr2 (189-299)||(44440461-44440571)
chr2 (189-339)||(4653720-4653870)
chr2 (189-339)||(8271060-8271212)
chr2 (216-370)||(22540123-22540277)
chr2 (189-271)||(45036059-45036141)
chr2 (189-371)||(6570939-6571117)
chr2 (143-188)||(4653350-4653395)
chr2 (239-271)||(45041761-45041793)
[»] chr4 (12 HSPs)
chr4 (189-338)||(41940488-41940635)
chr4 (190-328)||(50945993-50946131)
chr4 (189-306)||(11371634-11371750)
chr4 (189-368)||(25969778-25969954)
chr4 (189-369)||(47924180-47924360)
chr4 (186-345)||(54259406-54259564)
chr4 (189-339)||(27184705-27184855)
chr4 (193-307)||(40656116-40656230)
chr4 (189-299)||(6450497-6450607)
chr4 (221-371)||(23397487-23397636)
chr4 (143-189)||(47924683-47924729)
chr4 (143-184)||(41940954-41940995)
[»] chr6 (3 HSPs)
chr6 (189-339)||(2443355-2443505)
chr6 (189-293)||(29047284-29047387)
chr6 (263-375)||(10992776-10992888)
[»] chr5 (2 HSPs)
chr5 (241-375)||(38697370-38697504)
chr5 (223-279)||(1362525-1362581)


Alignment Details
Target: chr3 (Bit Score: 481; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 603
Target Start/End: Original strand, 10877469 - 10878062
Alignment:
Q  1 agttgagatggatcaaatcatgaagtagatgatgattatagtgaacttcaatattttgagattctaatttcgattgattttgttgtttcacacttcgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10877469 agttgagatggatcaaatcatgaagtagatgatgattatagtgaacttcaatattttgagattctaatttcgattgattttgttgtttcacacttcgtaa 10877568  T
Q  101 ttttgaaatattttaattagacctacaattttagattcttctatgcatttcttactatctcaatcttggtttggactcacactcatcgtattagagatgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10877569 ttttgaaatattttaattagacctacaattttagattcttctatgcatttcttactatctcaatcttggtttggactcacactcatcatattagagatgc 10877668  T
Q  201 tttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10877669 tttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatgcaaggtgctcg 10877768  T
Q  301 gctcactgaatctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtagaacttaatttcgtcttctcccctannnnnnnnnncttcttc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||    
T  10877769 gctcactgaatctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtagaacttaatttcgtcttctcccctatttttttttc--tcttc 10877866  T
Q  401 cttttacctcgttagattgtaacactaccnnnnnnnnnncttattcttctataaatgatttgggctgtatagtgcgacaatcgaaagatcaaattaaata 500  Q
    |||||||||||||||||||||||||||||             |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10877867 cttttacctcgttagattgtaacactaccaaaaaa-------aaacttctataaatgatttgggctgtatagtgcgacaatcgaaagatcaaattaaata 10877959  T
Q  501 atataagtgaaacatttttaagtaactctaaaagaagtcagatcgtctgcaccctttcgtgcagatgtnnnnnnncaaaattaaattaaattaatatacc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  10877960 atataagtgaaacatttttaagtaactctaaaagaagtcagatcgtctgcaccctttcgtgcagatgtaaaaaaacaaaattaaattaaattaatatacc 10878059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 189 - 296
Target Start/End: Original strand, 43445505 - 43445612
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||| ||||| ||||||||| ||| |||||||||| |||||||  || ||||||||||| || |||||| ||||||||||||||||  || ||||||||    
T  43445505 tattatagatgatttacatagaaataaaaatacaacgttgatgcccgttcttagggaacaaaatatgtgttcagattttatggctaacaaattatcacat 43445604  T
Q  289 acaaggtg 296  Q
    ||||||||    
T  43445605 acaaggtg 43445612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 189 - 320
Target Start/End: Complemental strand, 7320263 - 7320133
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    |||||||| |||||||||| | |||| |||||||| |||| ||||||  |||||| |||| || |||||||||||||||||||||||| ||| ||| |||    
T  7320263 tattagagttgctttacatggaaatggaaatacaatattggtgcatgctcttagg-aacaaaatatgtgtgcagattttatggctaagaaaggatctcat 7320165  T
Q  289 acaaggtgctcggctcactgaatctgccctcc 320  Q
     ||||||| || ||||| |||| |||| ||||    
T  7320164 gcaaggtgatctgctcattgaaactgcactcc 7320133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 211 - 310
Target Start/End: Complemental strand, 53590085 - 53589986
Alignment:
Q  211 aatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctcactgaa 310  Q
    |||||||||||||||||| |||||||  | |||||||| || ||||||||||||||||||||||||||   ||||||| ||| ||||||  |||||||||    
T  53590085 aatgaaaatacaacattggtgcatgttttaagggaacaaaatatgtgtgcagattttatggctaaggagagatcacatgcaatgtgctcttctcactgaa 53589986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 50426013 - 50426160
Alignment:
Q  192 tagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacataca 291  Q
    |||||||| ||||||  | |||||||||||||||||  ||||| |  ||| |||||| || |||| |||| |||||||||| ||||||| ||||||| ||    
T  50426013 tagagatgatttacacggaaatgaaaatacaacatttgtgcatatttttaaggaacaaaatatgtatgcatattttatggccaaggaaggatcacatgca 50426112  T
Q  292 aggtgctcggctcactgaatctgccctccgcctgacatgcaatctctc 339  Q
    | |||||  |||||||| | ||||| |||| |||||||  ||||||||    
T  50426113 atgtgctttgctcactggaactgccatccgtctgacattgaatctctc 50426160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 308
Target Start/End: Original strand, 17508781 - 17508872
Alignment:
Q  217 aatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctcactg 308  Q
    |||||||||||| ||||||| ||||||||||| || |||| |||| ||||||| | | |||||| ||||||| |||||||||| ||| ||||    
T  17508781 aatacaacattggtgcatgttcttagggaacaaaatatgtttgcatattttatagtttaggaaggatcacatgcaaggtgctctgcttactg 17508872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 51160944 - 51161021
Alignment:
Q  230 tgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctcact 307  Q
    ||||||| |||||  |||| |||||||||||| |||||||||||||||| | |||| || |||||||||| |||||||    
T  51160944 tgcatgttcttagaaaacaaaacatgtgtgcaaattttatggctaaggagggatcatattcaaggtgctctgctcact 51161021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 53590509 - 53590463
Alignment:
Q  143 atgcatttcttactatctcaatcttggtttggactcacactcatcgt 189  Q
    |||||||||||||||||| |||||| ||||||||||| |||||||||    
T  53590509 atgcatttcttactatctgaatcttagtttggactcatactcatcgt 53590463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 43445133 - 43445177
Alignment:
Q  143 atgcatttcttactatctcaatcttggtttggactcacactcatc 187  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||    
T  43445133 atgcatttcttactatcccaattttggtttggacccacactcatc 43445177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 176
Target Start/End: Original strand, 7321199 - 7321232
Alignment:
Q  143 atgcatttcttactatctcaatcttggtttggac 176  Q
    |||||||| |||||||||||||||||||||||||    
T  7321199 atgcattttttactatctcaatcttggtttggac 7321232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 189 - 371
Target Start/End: Original strand, 15243518 - 15243700
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||||||||| |||||||   |||||||| ||||||||| ||||||| |||||||||||  ||||||||||| |||||||||||||||||| |||||||    
T  15243518 tattagagatgttttacatgaaaatgaaaaaacaacattggtgcatgttcttagggaacaatacatgtgtgcatattttatggctaaggaaggatcacat 15243617  T
Q  289 acaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtagaacttaatttcg 371  Q
     |||||||||| |||||||| | ||||||||||| || |||| |||||||| ||||||  |||| || | |||||||||||||    
T  15243618 gcaaggtgctctgctcactggaactgccctccgcttggcatggaatctctcatcctaagagatatgcttggaacttaatttcg 15243700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 189 - 374
Target Start/End: Original strand, 12607975 - 12608162
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcaca- 287  Q
    ||||||||||| ||||||| | |||| ||||||||||||| ||||||| | || |||||| || |||||||||||||||||||||||||||| ||||||     
T  12607975 tattagagatggtttacatggaaatggaaatacaacattggtgcatgttcataaggaacaaaatatgtgtgcagattttatggctaaggaaggatcacat 12608074  T
Q  288 -tacaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtagaacttaatttcgtct 374  Q
     || ||||||||| ||||| || | |||||||||| |||||| | |||||||| |||| |  ||||||| | ||||||||||||||||    
T  12608075 gtaaaaggtgctctgctcattggaactgccctccgtctgacacggaatctctcatcctgagagataagcttggaacttaatttcgtct 12608162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 192 - 325
Target Start/End: Original strand, 12563321 - 12563453
Alignment:
Q  192 tagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacataca 291  Q
    ||||||| |||||||| | |||||||||||||||||| |||||||  ||||| || | || ||||||||||||||||||| |||||||| ||||||| ||    
T  12563321 tagagattctttacatggaaatgaaaatacaacattggtgcatgtttttaggaaaaa-aatatgtgtgcagattttatggttaaggaaggatcacatgca 12563419  T
Q  292 aggtgctcggctcactgaatctgccctccgcctg 325  Q
    |||||||  |||||||  | ||||||||||||||    
T  12563420 aggtgctatgctcactcgaactgccctccgcctg 12563453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 189 - 304
Target Start/End: Complemental strand, 1758704 - 1758589
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||||||||| |||||||   |||| ||||||||||||||||||||| ||||||| ||| || || ||||||||||||||||||||||||  |||||||    
T  1758704 tattagagatgatttacatgaaaatggaaatacaacattgatgcatgttcttaggggacaaaatatatgtgcagattttatggctaaggaacgatcacat 1758605  T
Q  289 acaaggtgctcggctc 304  Q
     |||| ||||| ||||    
T  1758604 gcaagatgctctgctc 1758589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 216 - 296
Target Start/End: Original strand, 12597097 - 12597177
Alignment:
Q  216 aaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtg 296  Q
    ||||| ||| ||| ||||||| ||||||||||| || |||||||||||||||||||||||||||| ||||||| |||||||    
T  12597097 aaatataactttggtgcatgttcttagggaacaaaatatgtgtgcagattttatggctaaggaaggatcacattcaaggtg 12597177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 189 - 307
Target Start/End: Original strand, 36128147 - 36128261
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    |||||||||| || ||||||  |||||||||| ||||||| |||||||     ||||||| || ||||||||| |||||||||||||||||  |||||||    
T  36128147 tattagagatcctatacataaaaatgaaaatataacattggtgcatgtt----gggaacaaaatatgtgtgcaaattttatggctaaggaaagatcacat 36128242  T
Q  289 acaaggtgctcggctcact 307  Q
     |||||||||| |||||||    
T  36128243 gcaaggtgctctgctcact 36128261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 189 - 279
Target Start/End: Complemental strand, 28932313 - 28932223
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaa 279  Q
    ||||| ||||||| ||||| | | || ||||||||||||| ||||||| ||||| ||||| || ||||||| |||||||||||||||||||    
T  28932313 tattaaagatgctctacatggaagtggaaatacaacattggtgcatgttcttagagaacaaaatatgtgtgtagattttatggctaaggaa 28932223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 15243150 - 15243195
Alignment:
Q  143 atgcatttcttactatctcaatcttggtttggactcacactcatcg 188  Q
    |||||| |||||||||| ||||| |||||||||| |||||||||||    
T  15243150 atgcatctcttactatcccaatcctggtttggacccacactcatcg 15243195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 23589609 - 23589654
Alignment:
Q  143 atgcatttcttactatctcaatcttggtttggactcacactcatcg 188  Q
    ||||||||||||| ||| ||||| |||||||||| |||||||||||    
T  23589609 atgcatttcttaccatcccaatcctggtttggacccacactcatcg 23589654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 1759063 - 1759019
Alignment:
Q  143 atgcatttcttactatctcaatcttggtttggactcacactcatc 187  Q
    ||||||||||||||||  |||||||||||||||| || |||||||    
T  1759063 atgcatttcttactattccaatcttggtttggacccatactcatc 1759019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 12562951 - 12562995
Alignment:
Q  143 atgcatttcttactatctcaatcttggtttggactcacactcatc 187  Q
    |||||||||||| |||| ||||||| |||||||| ||||||||||    
T  12562951 atgcatttcttattatcccaatcttcgtttggacccacactcatc 12562995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 183 - 339
Target Start/End: Complemental strand, 39997595 - 39997439
Alignment:
Q  183 tcatcgtattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagta 282  Q
    ||||| ||||||||||||||| ||| |||||  ||| ||||||||||||||||| |||||||| || || ||||||||| |||||||||||||||||  |    
T  39997595 tcatcatattagagatgctttccatgggaatagaaacacaacattgatgcatgttcttagggagcaaaatatgtgtgcaaattttatggctaaggaatga 39997496  T
Q  283 tcacatacaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctc 339  Q
    |||||| ||||||||||||||||||| | |||| |||||||||||||| ||||||||    
T  39997495 tcacatccaaggtgctcggctcactggaactgctctccgcctgacatggaatctctc 39997439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 189 - 369
Target Start/End: Complemental strand, 16824192 - 16824012
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    |||||||||||||||||||   ||||||||||||||||||  |||||| ||||||||||| || |||||| || |||||||||||||| ||| |||||||    
T  16824192 tattagagatgctttacatgaaaatgaaaatacaacattggcgcatgttcttagggaacaaaatatgtgtacaaattttatggctaagaaaggatcacat 16824093  T
Q  289 acaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtagaacttaattt 369  Q
     |||||||||| ||||| || | |||||||| | | | |||| |||||||| ||||||  ||||||| | |||||||||||    
T  16824092 gcaaggtgctctgctcaatggaactgccctctgacgggcatggaatctctcttcctaagagataagcttggaacttaattt 16824012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 189 - 370
Target Start/End: Original strand, 11075885 - 11076066
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||| |||||||||||||   |||| ||||||||||||| ||||||| | ||  ||||| || ||||||| || ||||||||||||||||| |||||||    
T  11075885 tattaaagatgctttacatgaaaatggaaatacaacattggtgcatgttcctaacgaacaaaatatgtgtgtaggttttatggctaaggaagaatcacat 11075984  T
Q  289 acaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtagaacttaatttc 370  Q
     ||| || ||| ||||| || | |||||||||| |||| ||| |||||||| | || |  ||||||| || |||||||||||    
T  11075985 gcaaagtactctgctcattggaactgccctccgtctgaaatgaaatctctcattctgagagataagcttaaaacttaatttc 11076066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 189 - 323
Target Start/End: Original strand, 8266791 - 8266925
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||| ||||| ||||||| | ||||  |||||||||||| ||||||| ||||||||||| || |  |||||||||||||||||||| |||  |||||||    
T  8266791 tattaaagatgttttacatggaaatggtaatacaacattggtgcatgttcttagggaacaaaatacttgtgcagattttatggctaaagaaagatcacat 8266890  T
Q  289 acaaggtgctcggctcactgaatctgccctccgcc 323  Q
     ||||||||||  ||| ||| | ||||||||||||    
T  8266891 gcaaggtgctctactcgctggaactgccctccgcc 8266925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 217 - 338
Target Start/End: Original strand, 18565921 - 18566042
Alignment:
Q  217 aatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctcactgaatctgcc 316  Q
    |||||||||||| ||||||| ||||||||||| ||||| |||| ||||||||||| |||||||  |||| || ||| |||||| |||| ||| |  ||||    
T  18565921 aatacaacattggtgcatgttcttagggaacaaaacatatgtgtagattttatggttaaggaatgatcatatgcaaagtgctctgctcgctggaattgcc 18566020  T
Q  317 ctccgcctgacatgcaatctct 338  Q
    |||||| || |||| |||||||    
T  18566021 ctccgcttggcatggaatctct 18566042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 189 - 370
Target Start/End: Complemental strand, 3620969 - 3620795
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||||||||  ||||||| | ||||| || || |||||  ||||||| ||||| ||||| ||||||||| || |||||||||||||||| | ||| |||    
T  3620969 tattagagatattttacatggaaatgataacactacattagtgcatgttcttagagaacaaaacatgtgtacaaattttatggctaaggaggaatcgcat 3620870  T
Q  289 acaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtagaacttaatttc 370  Q
     |||| || || |||| |||        |||||||| ||||| | |||||| ||||||||||||||| || |||||| ||||    
T  3620869 tcaagatgttctgctctctg-------tctccgcctaacatggagtctctcatcctaaaggataagcttaaaacttactttc 3620795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 189 - 320
Target Start/End: Original strand, 9427761 - 9427892
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||||||||| ||||||| | ||||  ||||||| ||||  |||||| ||||||||||| ||   || || |||||||| | ||||||||| |||||||    
T  9427761 tattagagatgttttacatggaaatggtaatacaagattggcgcatgttcttagggaacaaaattcgtatgtagattttacgactaaggaaggatcacat 9427860  T
Q  289 acaaggtgctcggctcactgaatctgccctcc 320  Q
     ||||||||||  ||| ||| | |||||||||    
T  9427861 gcaaggtgctctactcgctggaactgccctcc 9427892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 306
Target Start/End: Original strand, 2887592 - 2887710
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagg-gaacataacatgtgtgcagattttatggctaaggaagtatcaca 287  Q
    ||||||||||| |||| || | |||||||||||||||||| |||||||  | |||  |||| || ||||||| | |||||||||  ||||||| ||| ||    
T  2887592 tattagagatgatttatatggaaatgaaaatacaacattggtgcatgttttaaggaaaacaaaatatgtgtgtaaattttatggtcaaggaaggatctca 2887691  T
Q  288 tacaaggtgctcggctcac 306  Q
    | |||||||||| ||||||    
T  2887692 tgcaaggtgctctgctcac 2887710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 2887224 - 2887267
Alignment:
Q  143 atgcatttcttactatctcaatcttggtttggactcacactcat 186  Q
    |||||||| |||||||| |||||||||||||||| |||||||||    
T  2887224 atgcattttttactatcccaatcttggtttggacccacactcat 2887267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 258 - 338
Target Start/End: Complemental strand, 43684416 - 43684336
Alignment:
Q  258 tgcagattttatggctaaggaagtatcacatacaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctct 338  Q
    ||||||||||||||||||||||  |||||||  ||||||||| ||||| || |  | ||||| | |||||||| |||||||    
T  43684416 tgcagattttatggctaaggaatgatcacatgtaaggtgctctgctcattggaattaccctctgtctgacatggaatctct 43684336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 189 - 339
Target Start/End: Complemental strand, 54849 - 54699
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||||||||| ||||||| | ||||  |||||||||||| |||||||  |||||||||| || ||||||||||| |||||||||||||||| |||||||    
T  54849 tattagagatgttttacatggaaatggtaatacaacattgttgcatgtttttagggaacaaaatatgtgtgcagactttatggctaaggaagaatcacat 54750  T
Q  289 acaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctc 339  Q
     |||||||||| |||||||| | ||| ||||| ||||||||| ||||||||    
T  54749 gcaaggtgctctgctcactggaactgtcctccacctgacatggaatctctc 54699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 8e-32; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 189 - 371
Target Start/End: Complemental strand, 27046241 - 27046059
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||||||||| ||||||| | |||||||||||||||||| ||||||| |||| |||||| || | ||| ||| ||||| || ||||||||| |||||||    
T  27046241 tattagagatgttttacatggaaatgaaaatacaacattggtgcatgttcttatggaacaaaatacgtgggcaaattttgtgactaaggaaggatcacat 27046142  T
Q  289 acaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtagaacttaatttcg 371  Q
     |||||||||| |||||||| | ||| | ||||||||||||| |||||||| |||||   ||||||| | || ||||||||||    
T  27046141 gcaaggtgctctgctcactggaactgtcatccgcctgacatgaaatctctcatcctaggagataagcttggagcttaatttcg 27046059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 190 - 375
Target Start/End: Complemental strand, 10329055 - 10328870
Alignment:
Q  190 attagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacata 289  Q
    |||||||||||||||||| | ||||  || ||||||||| ||||||| ||||||||||| || ||||||||| ||||||| |  ||||||| |||||||     
T  10329055 attagagatgctttacatggaaatgggaacacaacattggtgcatgttcttagggaacaaaatatgtgtgcaaattttatagtgaaggaaggatcacatg 10328956  T
Q  290 caaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtagaacttaatttcgtctt 375  Q
    ||| |||||| |||||||| | |   ||||||||||||||| |||||||| |||| |  ||||| | | |||||||||||||||||    
T  10328955 caaagtgctctgctcactggaaccatcctccgcctgacatggaatctctcatcctgagagataaacttggaacttaatttcgtctt 10328870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 189 - 369
Target Start/End: Complemental strand, 5464648 - 5464468
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||||||||| ||||||| | |||| ||||| ||||||| ||||| | ||| ||||||| || |  ||||||||||||||||||||||||| |||||||    
T  5464648 tattagagatgttttacatggaaatggaaatagaacattggtgcatattcttggggaacaaaatacatgtgcagattttatggctaaggaaggatcacat 5464549  T
Q  289 acaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtagaacttaattt 369  Q
     |||||||||  | |||||||| |||||||||| |||||||  |||||||| |||| |  ||||||| |  ||||||||||    
T  5464548 gcaaggtgctttggtcactgaaactgccctccgtctgacatagaatctctcatcctgagagataagcttgaaacttaattt 5464468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 211 - 373
Target Start/End: Complemental strand, 5949635 - 5949473
Alignment:
Q  211 aatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctcactgaa 310  Q
    |||| ||||||||||||| ||||||| ||||||||||| ||||||||||  ||||||| ||||||| ||| ||||||| |||||| |||  ||||||| |    
T  5949635 aatggaaatacaacattggtgcatgttcttagggaacaaaacatgtgtgttgattttacggctaagaaaggatcacatgcaaggtactctactcactgga 5949536  T
Q  311 tctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtagaacttaatttcgtc 373  Q
      ||||||||||| | |||| |||||||| | || |  ||||||| | |||||||||||||||    
T  5949535 attgccctccgcccggcatggaatctctcattctgagagataagcttggaacttaatttcgtc 5949473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 189 - 371
Target Start/End: Original strand, 12501706 - 12501888
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||||||| | |||||||   |||| ||||||||||||| ||||||| ||||||  ||| ||||||||||||||||||||||||||||| | ||  |||    
T  12501706 tattagagacgttttacatgaaaatggaaatacaacattggtgcatgttcttaggttacaaaacatgtgtgcagattttatggctaaggacggattgcat 12501805  T
Q  289 acaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtagaacttaatttcg 371  Q
     |||||||||| |||||||| | |||||| || |||| |||| ||||| || || | |  ||||||| | |||||||||||||    
T  12501806 gcaaggtgctctgctcactggaactgcccccctcctggcatggaatctttcatcttgagagataagcttcgaacttaatttcg 12501888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 189 - 368
Target Start/End: Original strand, 12527340 - 12527519
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||||||| | |||||||   |||| ||||||||||||| ||||||| ||||||  ||| ||||||||||||||||||||||||||||| | ||  |||    
T  12527340 tattagagacgttttacatgaaaatggaaatacaacattggtgcatgttcttaggttacaaaacatgtgtgcagattttatggctaaggacggattgcat 12527439  T
Q  289 acaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtagaacttaatt 368  Q
     |||||||||| || ||| | | |||||| ||||||  |||| ||||| || |||| |  ||||||| | ||||||||||    
T  12527440 gcaaggtgctctgcccacaggaactgccccccgcctagcatggaatctttcatcctgagagataagcttcgaacttaatt 12527519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 230 - 339
Target Start/End: Original strand, 41029397 - 41029506
Alignment:
Q  230 tgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctcactgaatctgccctccgcctgacat 329  Q
    ||||||| ||| | ||||| || ||||||| ||||||||||||||||||||  ||||||||||||||||| ||||| || | ||| ||||| ||||||||    
T  41029397 tgcatgttcttcgcgaacaaaatatgtgtgtagattttatggctaaggaagggtcacatacaaggtgctctgctcattggaactgtcctccacctgacat 41029496  T
Q  330 gcaatctctc 339  Q
    | ||||||||    
T  41029497 ggaatctctc 41029506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 13278638 - 13278748
Alignment:
Q  264 ttttatggctaaggaagtatcacatacaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtagaact 363  Q
    ||||||||||||||||| || |||| |||||||||| |||||||| | | |||||||||||| |||| |||||||| |||| |  ||||| | | |||||    
T  13278638 ttttatggctaaggaaggatgacatgcaaggtgctctgctcactggaaccgccctccgcctgtcatggaatctctcatcctgagagataaccttggaact 13278737  T
Q  364 taatttcgtct 374  Q
    |||||||||||    
T  13278738 taatttcgtct 13278748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 238 - 371
Target Start/End: Original strand, 23810075 - 23810208
Alignment:
Q  238 cttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctc 337  Q
    ||||||||| | |||||||||| | ||||||||| ||| |||  ||||||| |||| ||||| ||||||| || || ||||||| |||||||| ||||||    
T  23810075 cttagggaataaaacatgtgtgaaaattttatggataaagaatgatcacatgcaagatgctctgctcactaaaactaccctccgtctgacatgaaatctc 23810174  T
Q  338 tcgtcctaaaggataagcgtagaacttaatttcg 371  Q
    || | ||||   |||||| | | |||||||||||    
T  23810175 tcattctaagatataagcttgggacttaatttcg 23810208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 25828485 - 25828380
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||| ||||||| |||||   |||| ||||||||||||| |||||||  ||| | |||  || |||||||||||||||||| ||||||||| |||||||    
T  25828485 tattaaagatgctctacatgaaaatggaaatacaacattggtgcatgttattacg-aacgaaatatgtgtgcagattttatgtctaaggaaggatcacat 25828387  T
Q  289 acaaggt 295  Q
     ||||||    
T  25828386 gcaaggt 25828380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 229 - 322
Target Start/End: Original strand, 31443626 - 31443719
Alignment:
Q  229 atgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctcactgaatctgccctccgc 322  Q
    |||||||| ||||||||| | || ||||||| |||||||||||||||||||  || |||| ||||||  || |||| ||| | |||||||||||    
T  31443626 atgcatgttcttagggaataaaatatgtgtgtagattttatggctaaggaatgattacatgcaaggtattctgctctctggaactgccctccgc 31443719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 12501645 - 12501685
Alignment:
Q  143 atgcatttcttactatctcaatcttggtttggactcacact 183  Q
    ||||||||||||||||| ||||| |||||||||| ||||||    
T  12501645 atgcatttcttactatcccaatcctggtttggacccacact 12501685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 12527279 - 12527319
Alignment:
Q  143 atgcatttcttactatctcaatcttggtttggactcacact 183  Q
    ||||||||||||||||| ||||| |||||||||| ||||||    
T  12527279 atgcatttcttactatcccaatcctggtttggacccacact 12527319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 189 - 299
Target Start/End: Original strand, 44440461 - 44440571
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||||||||| |||||||   |||||||||||||||||| ||||||| ||||||||||| || ||||||||||||||||||| |||||||| |||||||    
T  44440461 tattagagatgttttacatgaaaatgaaaatacaacattggtgcatgttcttagggaacaaaatatgtgtgcagattttatggttaaggaaggatcacat 44440560  T
Q  289 acaaggtgctc 299  Q
     |||| |||||    
T  44440561 gcaagttgctc 44440571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 189 - 339
Target Start/End: Original strand, 4653720 - 4653870
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||| ||||||| ||||| | |||| |||||| | |||| | ||||| || |  ||||| || ||||||||| |||||||||||||||||| |||||||    
T  4653720 tattaaagatgctctacatggaaatggaaatactatattggtacatgttctcatagaacaaaatatgtgtgcaaattttatggctaaggaaggatcacat 4653819  T
Q  289 acaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctc 339  Q
    ||||||||||| |||||||| |  || |||||| |||||||| ||||||||    
T  4653820 acaaggtgctctgctcactggaagtgtcctccgtctgacatgaaatctctc 4653870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 189 - 339
Target Start/End: Complemental strand, 8271212 - 8271060
Alignment:
Q  189 tattagagatgctttacataggaatgaaaataca--acattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcac 286  Q
    |||||||||||||||||||   |||| |||||||  ||| || | ||||| ||||||||||| || |||| ||||||||||||||||||||||| |||||    
T  8271212 tattagagatgctttacatgaaaatggaaatacacaacagtggttcatgttcttagggaacaaaatatgtatgcagattttatggctaaggaagaatcac 8271113  T
Q  287 atacaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctc 339  Q
    || |||| ||||  |||||||| |  |||||||||||||| ||| ||| ||||    
T  8271112 atgcaagatgctatgctcactggaattgccctccgcctgatatggaatgtctc 8271060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 216 - 370
Target Start/End: Original strand, 22540123 - 22540277
Alignment:
Q  216 aaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctcactgaatctgc 315  Q
    ||||||||||||| ||||||| ||  | ||||| || || ||||||||||||||| |||||||||  ||||||||||||||||| | || ||| |  |||    
T  22540123 aaatacaacattggtgcatgttctcggagaacaaaatatatgtgcagattttatgactaaggaagagtcacatacaaggtgctctgttcgctggaattgc 22540222  T
Q  316 cctccgcctgacatgcaatctctcgtcctaaaggataagcgtagaacttaatttc 370  Q
    ||||||||||| ||| |||||||| |||| |  ||||| | | ||||||||||||    
T  22540223 cctccgcctgatatggaatctctcatcctgagagataaacttggaacttaatttc 22540277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 45036141 - 45036059
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatgg 271  Q
    ||||||||||| |||||||   |||||||||||||||||  ||||||| ||||||||||| |||||||||||| |||||||||    
T  45036141 tattagagatgttttacatgaaaatgaaaatacaacattagtgcatgttcttagggaacaaaacatgtgtgcaaattttatgg 45036059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 371
Target Start/End: Complemental strand, 6571117 - 6570939
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||||||||||||| ||| | |||  |||||||| |||  | ||||| ||||||||||| || | |||||||||||||||| ||||||||| ||| |||    
T  6571117 tattagagatgctttgcatggaaatagaaatacaatattagtacatgttcttagggaacaaaatacgtgtgcagattttatgactaaggaaggatcgcat 6571018  T
Q  289 acaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtagaacttaatttcg 371  Q
     ||||| |  | |||||||| | |||||||||    | |||| |||||||| |||| |  ||||||| | |||||||||||||    
T  6571017 gcaaggcgtgctgctcactggaactgccctcc----ggcatggaatctctcatcctgagagataagcttggaacttaatttcg 6570939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 4653350 - 4653395
Alignment:
Q  143 atgcatttcttactatctcaatcttggtttggactcacactcatcg 188  Q
    ||||||||||||||||| ||||| |||||||||| |||||||||||    
T  4653350 atgcatttcttactatcccaatcatggtttggacccacactcatcg 4653395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 45041793 - 45041761
Alignment:
Q  239 ttagggaacataacatgtgtgcagattttatgg 271  Q
    |||||||||| ||||||||||||||||||||||    
T  45041793 ttagggaacaaaacatgtgtgcagattttatgg 45041761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 189 - 338
Target Start/End: Complemental strand, 41940635 - 41940488
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||||||||| ||||||| | ||||  |||||||||||||||||||| ||||||||||  || || |||||| |||||||||||||||||| |||||||    
T  41940635 tattagagatgttttacatggaaatggtaatacaacattgatgcatgttcttagggaac--aaaatatgtgcaaattttatggctaaggaaggatcacat 41940538  T
Q  289 acaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctct 338  Q
     ||||||| || |||| ||  | ||  ||||||||||||||| |||||||    
T  41940537 gcaaggtgttctgctcgctagaactatcctccgcctgacatgaaatctct 41940488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 190 - 328
Target Start/End: Original strand, 50945993 - 50946131
Alignment:
Q  190 attagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacata 289  Q
    |||||||||| |||||||   ||||||||||||||||||||||||||  |||| ||||| || ||| ||| ||||||||| |||||||||| |||||||     
T  50945993 attagagatgttttacatgaaaatgaaaatacaacattgatgcatgtttttagagaacaaaatatgcgtgtagattttattgctaaggaaggatcacatg 50946092  T
Q  290 caaggtgctcggctcactgaatctgccctccgcctgaca 328  Q
    |||| ||||| |||||||||| || || ||||| |||||    
T  50946093 caagatgctctgctcactgaaactaccatccgcttgaca 50946131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 189 - 306
Target Start/End: Original strand, 11371634 - 11371750
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||||||||  ||||||| | |||| ||||||||||||| ||||||| |||||| |||| || |||||||||||||||||||||||||||  |||| ||    
T  11371634 tattagagattatttacatggaaatggaaatacaacattggtgcatgttcttagg-aacaaaatatgtgtgcagattttatggctaaggaatgatcaaat 11371732  T
Q  289 acaaggtgctcggctcac 306  Q
     |||||||||| ||||||    
T  11371733 gcaaggtgctctgctcac 11371750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 189 - 368
Target Start/End: Original strand, 25969778 - 25969954
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||||||||| ||||||| | |||||||||||||||||| ||||||| |||| |||||| || ||||||||| ||||||| |||   |||| |||||||    
T  25969778 tattagagatgttttacatggaaatgaaaatacaacattggtgcatgttcttaaggaacaaaatatgtgtgcatattttatagct---gaagaatcacat 25969874  T
Q  289 acaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtagaacttaatt 368  Q
     ||||||| || |||||||  | ||||||| ||| || |||| |||||||| |||  |  ||||||| | ||||||||||    
T  25969875 gcaaggtgttctgctcactagaactgcccttcgcttggcatggaatctctcatcccgagagataagcttggaacttaatt 25969954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 189 - 369
Target Start/End: Complemental strand, 47924360 - 47924180
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    |||| |||||| |||||||   |||| ||||| ||||||| ||||| | || || ||||| ||||||||||| ||||||||||||||| ||| |||| ||    
T  47924360 tattcgagatgttttacatgaaaatggaaatataacattggtgcatattctcagcgaacaaaacatgtgtgctgattttatggctaagtaaggatcatat 47924261  T
Q  289 acaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtagaacttaattt 369  Q
     |||||||||| ||||||||||  |||||||| || | |||| |||||||| | ||||  |||| || | |||||||||||    
T  47924260 gcaaggtgctctgctcactgaaattgccctccaccgggcatggaatctctcattctaagagatacgcttggaacttaattt 47924180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 186 - 345
Target Start/End: Original strand, 54259406 - 54259564
Alignment:
Q  186 tcgtattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatca 285  Q
    ||||| |||||||| ||||||| | |||| |||||||||||||  |||||| ||||||||||| || ||||||||| |||| ||||||||  ||| ||||    
T  54259406 tcgtaatagagatgatttacatggaaatggaaatacaacattggagcatgttcttagggaacaaaatatgtgtgcaaatttcatggctaa-aaaggatca 54259504  T
Q  286 catacaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctcgtccta 345  Q
    ||| || ||||||| ||| | |||| ||| ||||||||| ||||  |||||||| |||||    
T  54259505 catgcacggtgctctgctgagtgaaactgtcctccgcctaacataaaatctctcatccta 54259564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 189 - 339
Target Start/End: Complemental strand, 27184855 - 27184705
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||||||||| |||||||   ||||  ||||||||||| |||||||| | ||||||||| || |||| || | |||||||||||||||||| ||||| |    
T  27184855 tattagagatgttttacatgaaaatggtaatacaacattaatgcatgttcatagggaacaaaatatgtatgtatattttatggctaaggaaggatcacgt 27184756  T
Q  289 acaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctc 339  Q
     ||| |||||| |||||||| |  || |||||| |||| ||| ||||||||    
T  27184755 gcaatgtgctctgctcactggaattgtcctccgtctgatatgaaatctctc 27184705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 40656230 - 40656116
Alignment:
Q  193 agagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaa 292  Q
    ||||||| ||||||| | |||| |||||| |||||| ||||||| || || ||||| || |||||||||||||||||| ||||||||| |||| || | |    
T  40656230 agagatgttttacatggaaatggaaatacgacattggtgcatgttctaagagaacaaaatatgtgtgcagattttatgactaaggaagaatcatatgcga 40656131  T
Q  293 ggtgctcggctcact 307  Q
    ||||||  |||||||    
T  40656130 ggtgctatgctcact 40656116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 189 - 299
Target Start/End: Original strand, 6450497 - 6450607
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||||||||| |||||||   |||| |||||||||| || | ||||| ||||||||||| || ||||||| ||||||||||| ||||||   |||||||    
T  6450497 tattagagatgatttacatgaaaatggaaatacaacagtggttcatgttcttagggaacaaaatatgtgtgtagattttatggttaaggataaatcacat 6450596  T
Q  289 acaaggtgctc 299  Q
     |||| |||||    
T  6450597 gcaagatgctc 6450607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 221 - 371
Target Start/End: Complemental strand, 23397636 - 23397487
Alignment:
Q  221 caacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctcactgaatctgccctcc 320  Q
    |||||||| ||||||| ||||||||||| ||||| |||||| ||||||||||||| |||| |||| || | ||||| |    |||||| |  || |||||    
T  23397636 caacattggtgcatgttcttagggaacaaaacatatgtgcaaattttatggctaatgaagaatcatatgctaggtgttatattcactggaattgtcctcc 23397537  T
Q  321 gcctgacatgcaatctctcgtcctaaaggataagcgtagaacttaatttcg 371  Q
    | ||| |||| |||||||| ||||||| ||||||  | |||||||||||||    
T  23397536 gtctggcatggaatctctcatcctaaa-gataagtttggaacttaatttcg 23397487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 47924729 - 47924683
Alignment:
Q  143 atgcatttcttactatctcaatcttggtttggactcacactcatcgt 189  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  47924729 atgcatttcttactatcccaatcttggtttggacccacactcatcgt 47924683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 41940995 - 41940954
Alignment:
Q  143 atgcatttcttactatctcaatcttggtttggactcacactc 184  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  41940995 atgcatttcttactatcccaatcttggtttggacccacactc 41940954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 189 - 339
Target Start/End: Original strand, 2443355 - 2443505
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||||||||| |||||||   ||||  ||||||||||| |||||||| | ||||||||| || |||| || | |||||||||||||||||| ||||| |    
T  2443355 tattagagatgttttacatgaaaatggtaatacaacattaatgcatgttcatagggaacaaaatatgtatgtatattttatggctaaggaaggatcacgt 2443454  T
Q  289 acaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctc 339  Q
     ||| |||||| |||||||| |  || |||||| |||| ||| ||||||||    
T  2443455 gcaatgtgctctgctcactggaattgtcctccgtctgatatgaaatctctc 2443505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 29047284 - 29047387
Alignment:
Q  189 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 288  Q
    ||||||||||||||||||| | ||||  |||| ||||||  | ||| | ||||||||||| || |||||||||||||||||||||| | ||| |||||||    
T  29047284 tattagagatgctttacatggaaatggtaataaaacattagtacattt-cttagggaacaaaatatgtgtgcagattttatggctatgtaaggatcacat 29047382  T
Q  289 acaag 293  Q
     ||||    
T  29047383 gcaag 29047387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 263 - 375
Target Start/End: Complemental strand, 10992888 - 10992776
Alignment:
Q  263 attttatggctaaggaagtatcacatacaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtagaac 362  Q
    |||||||||||||| ||  ||||||| ||||||| || |||| ||  | |||||||||| |||||||  |||||||| |||| |||||||| | | | ||    
T  10992888 attttatggctaagaaatgatcacatgcaaggtgttctgctctctacaactgccctccgtctgacataaaatctctcatcctgaaggataaacttggcac 10992789  T
Q  363 ttaatttcgtctt 375  Q
    ||||||| |||||    
T  10992788 ttaattttgtctt 10992776  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 375
Target Start/End: Complemental strand, 38697504 - 38697370
Alignment:
Q  241 agggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctcg 340  Q
    |||||||| || |||| |||||||||||| |||||||||| ||||||| |||| ||||| |||   || | |||||||| | ||| |||| ||||||||     
T  38697504 agggaacaaaatatgtctgcagattttatagctaaggaaggatcacatgcaagatgctctgctggttggaactgccctctgtctggcatggaatctctca 38697405  T
Q  341 tcctaaaggataagcgtagaacttaatttcgtctt 375  Q
    |||| |  ||||| | |  ||||||||||||||||    
T  38697404 tcctgagagataaacttgaaacttaatttcgtctt 38697370  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 1362525 - 1362581
Alignment:
Q  223 acattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaa 279  Q
    |||||||| ||||| ||||| ||||| || |||| || |||||||||||||||||||    
T  1362525 acattgatacatgttcttagtgaacaaaatatgtatgtagattttatggctaaggaa 1362581  T

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