View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7811_low_20 (Length: 384)

Name: NF7811_low_20
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7811_low_20
NF7811_low_20
[»] chr4 (1 HSPs)
chr4 (53-384)||(44001096-44001428)


Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 53 - 384
Target Start/End: Complemental strand, 44001428 - 44001096
Alignment:
Q  53 atggtgaaatatatcgatttccgcttgcatatcatatagtttgtgtgaagattttagctcatactccaaacttttagtctagtaccacctactctctccc 152  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||  ||    
T  44001428 atggtgaaatatatccatttccacttgcatatcatatagtttgtgtgaaaattttagctcatactccaaacttttagtctagtaccacctactatc--cc 44001331  T
Q  153 cttgcaaaccatatgagctacctaaataacctttcctcttaataaatacataaaaattacta---ttttttatcactttaaatttaagattccccaaatt 249  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  44001330 cttgcaaaccatatgagctacctaaatcacttttcctcttaataaatacataaaaattactactattttttatcactttaaatttaagattccccaaatt 44001231  T
Q  250 aacaggcttgaatttgagttttcccaaaagcgaattttcctttgtgtttgtcttcttcccgcttttctccaaacgtccctgcctgccacaaacgtcatcc 349  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44001230 aacaggcttgaatttgagttttcccaaaagcgaatttccctttgtgtttgtcttcttcccgcttttctccaaacgtacctgcctgccacaaacgtcatcc 44001131  T
Q  350 caactctctccactcaataatgctatcatttcctc 384  Q
    |||||||||| ||||||||||||||||||||||||    
T  44001130 caactctctctactcaataatgctatcatttcctc 44001096  T

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