View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7811_low_22 (Length: 372)
Name: NF7811_low_22
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_low_22 |
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| [»] scaffold0408 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 14786600 - 14786746
Alignment:
| Q |
1 |
acaaggttaattttttcagagttggtttttatggctatcaagacacattgtatgatgccaatggaagacactactacaaactttgcaccatacaaggtgc |
100 |
Q |
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| T |
14786600 |
acaaggttaattttttcagagttgctttttatggctatcaagacacactgtatgatgcaaatggaagacactactacaaactttgtaccatacaaggtgc |
14786699 |
T |
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| Q |
101 |
tgtagattttatctttggtgctggccaatctttgtttgaggtaaata |
147 |
Q |
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| T |
14786700 |
tgtagattttatctttggtgctggccaatctttgtttgaggtaaata |
14786746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 14773285 - 14773430
Alignment:
| Q |
10 |
attttttcagagttggtttttatggctatcaagacacattgtatgatgccaatggaagacactactacaaactttgcaccatacaaggtgctgtagattt |
109 |
Q |
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| T |
14773285 |
atttttttagggttggtttctttggttatcaagacactttgtgggacaacaatggaagacactactacaagctttgtaccatacaaggtgctatagattt |
14773384 |
T |
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| Q |
110 |
tatctttggtgctggccaatctttgtttgaggtaaataatttctct |
155 |
Q |
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| T |
14773385 |
tatctttggtgcaggccagtctttgttcgaggtaaacaaattctct |
14773430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 366
Target Start/End: Original strand, 14786753 - 14786930
Alignment:
| Q |
186 |
accatgcaatagattttaatttcaaatgcaaacaaaactttattnnnnnnncctagagaagataagtacaaagggggcgtcctcgtaaactt---agatc |
282 |
Q |
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| T |
14786753 |
accatgcaatagattttaatttcaaatgcaaacaaaactttattaaaaaa-cctagagaagataagtacaaagtggtatt-----tgagcttcaaagaga |
14786846 |
T |
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| Q |
283 |
agttggtagtaatacacaatataagagggcgtcctcgtaaacttagattagttggtagaagtttgaaccccgaccaccaccaaa |
366 |
Q |
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| T |
14786847 |
aaatagtactaatacacattataagagagtgtcctcgtgaacttagatcagttggtaggggtttgaaccccgaccaccaccaaa |
14786930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 11771 - 11919
Alignment:
| Q |
1 |
acaaggttaatttttt-cagagttggtttt-tatggctatcaagacacattgtatgatgccaatggaagacactactacaaactttgcaccatacaaggt |
98 |
Q |
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| T |
11771 |
acaaggttaatttttttcagagttgcttttttatggctatcaagacacactgtatgatgcaaatggaagacactactacaaactttgtaccatacaaggt |
11870 |
T |
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| Q |
99 |
gctgtagattttatctttggtgctggccaatctttgtttgaggtaaata |
147 |
Q |
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| T |
11871 |
gctgtagattttatctttggtgctggccaatctttgtttgaggtaaata |
11919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 366
Target Start/End: Original strand, 11926 - 12103
Alignment:
| Q |
186 |
accatgcaatagattttaatttcaaatgcaaacaaaactttattnnnnnnncctagagaagataagtacaaagggggcgtcctcgtaaactt---agatc |
282 |
Q |
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| T |
11926 |
accatgcaatagattttaatttcaaatgcaaacaaaactttattaaaaaa-cctagagaagataagtacaaagtggtatt-----tgagcttcaaagaga |
12019 |
T |
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| Q |
283 |
agttggtagtaatacacaatataagagggcgtcctcgtaaacttagattagttggtagaagtttgaaccccgaccaccaccaaa |
366 |
Q |
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| T |
12020 |
aaatagtactaatacacattataagagagtgtcctcgtgaacttagatcagttggtaggggtttgaaccccgaccaccaccaaa |
12103 |
T |
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