View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7811_low_26 (Length: 362)

Name: NF7811_low_26
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7811_low_26
NF7811_low_26
[»] chr1 (4 HSPs)
chr1 (131-344)||(31835330-31835543)
chr1 (15-63)||(31835611-31835660)
chr1 (232-282)||(31698767-31698817)
chr1 (306-344)||(32834792-32834830)
[»] chr7 (4 HSPs)
chr7 (232-282)||(4033323-4033373)
chr7 (216-282)||(42493809-42493876)
chr7 (232-282)||(38198513-38198563)
chr7 (251-283)||(23817134-23817166)
[»] chr5 (1 HSPs)
chr5 (201-282)||(32300570-32300652)
[»] chr3 (2 HSPs)
chr3 (216-283)||(21894209-21894277)
chr3 (305-344)||(9281481-9281520)
[»] chr2 (1 HSPs)
chr2 (238-274)||(2544023-2544059)
[»] chr8 (2 HSPs)
chr8 (305-344)||(29802749-29802788)
chr8 (238-274)||(16345364-16345400)
[»] chr6 (1 HSPs)
chr6 (232-283)||(26389189-26389240)
[»] chr4 (1 HSPs)
chr4 (201-274)||(36662501-36662575)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 131 - 344
Target Start/End: Complemental strand, 31835543 - 31835330
Alignment:
Q  131 aagtattgcttaggtatttagattttgtaaattacttcacttattggagtatggtcaaatctctttttagtacttcttccatcctatattatacgacaca 230  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||| | ||||||||||||| |||    
T  31835543 aagtattgcttaggtatttagattttgtaaattacttcgcttattggagtatggtcatatttctttttagtacttcttccgttctatattatacgataca 31835444  T
Q  231 gtgactctgtcacacatatcaatgcataattttaatcttaaatatatttaatagtattttatatgaatggtgcccattttcaaattaggtcatttaaaat 330  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31835443 gtgactctgtcatacatatcaatgcataattttaatcttaaatatatttaatagtattttatatgaatggtgcccattttcaaattaggtcatttaaaat 31835344  T
Q  331 gggatggatggagt 344  Q
    || |||||||||||    
T  31835343 ggaatggatggagt 31835330  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 31835660 - 31835611
Alignment:
Q  15 tatctaccaacaagtctagaaaggtttttaaaat-ggagggtgaataatg 63  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31835660 tatctaccaacaagtctagaaaggtttttaaaatgggagggtgaataatg 31835611  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 31698817 - 31698767
Alignment:
Q  232 tgactctgtcacacatatcaatgcataattttaatcttaaatatatttaat 282  Q
    |||||||| ||||||||||||||||||  ||||||||| ||||||||||||    
T  31698817 tgactctgacacacatatcaatgcatatatttaatctttaatatatttaat 31698767  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 344
Target Start/End: Complemental strand, 32834830 - 32834792
Alignment:
Q  306 attttcaaattaggtcatttaaaatgggatggatggagt 344  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  32834830 atttttaaattaggtcatttaaaatgggatggagggagt 32834792  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 282
Target Start/End: Original strand, 4033323 - 4033373
Alignment:
Q  232 tgactctgtcacacatatcaatgcataattttaatcttaaatatatttaat 282  Q
    |||||||| |||||||||||||||||| |||| ||||| ||||||||||||    
T  4033323 tgactctgacacacatatcaatgcatattttttatctttaatatatttaat 4033373  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 42493876 - 42493809
Alignment:
Q  216 atattatacgacacagt-gactctgtcacacatatcaatgcataattttaatcttaaatatatttaat 282  Q
    |||||| | |||||||| |||||||||||||||||||||| ||| |||| ||||| ||||| ||||||    
T  42493876 atattaaatgacacagttgactctgtcacacatatcaatgtatattttttatctttaatatctttaat 42493809  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 282
Target Start/End: Original strand, 38198513 - 38198563
Alignment:
Q  232 tgactctgtcacacatatcaatgcataattttaatcttaaatatatttaat 282  Q
    ||||||||  ||||||||||||||||| |||| ||||| ||||||||||||    
T  38198513 tgactctgatacacatatcaatgcatattttttatctttaatatatttaat 38198563  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 283
Target Start/End: Complemental strand, 23817166 - 23817134
Alignment:
Q  251 aatgcataattttaatcttaaatatatttaata 283  Q
    ||||||||||||||||||||||||| |||||||    
T  23817166 aatgcataattttaatcttaaatatctttaata 23817134  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 282
Target Start/End: Original strand, 32300570 - 32300652
Alignment:
Q  201 tacttcttccatcctatattatacgacacagt-gactctgtcacacatatcaatgcataattttaatcttaaatatatttaat 282  Q
    |||| ||||||||  |||||| | |||||||| |||||||||||| ||||||||||||| |||| ||||| ||||| ||||||    
T  32300570 tactccttccatctcatattaaatgacacagttgactctgtcacaaatatcaatgcatattttttatctttaatatctttaat 32300652  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 21894209 - 21894277
Alignment:
Q  216 atattatacgacacagt-gactctgtcacacatatcaatgcataattttaatcttaaatatatttaata 283  Q
    ||||||| ||| ||||| ||||||| |||||||||||||| | |||||| ||||||||||| |||||||    
T  21894209 atattattcgatacagttgactctgccacacatatcaatgtacaattttgatcttaaatatctttaata 21894277  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 344
Target Start/End: Original strand, 9281481 - 9281520
Alignment:
Q  305 cattttcaaattaggtcatttaaaatgggatggatggagt 344  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  9281481 cattttcaaattaggtcatttaaaatgggacggagggagt 9281520  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 2544059 - 2544023
Alignment:
Q  238 tgtcacacatatcaatgcataattttaatcttaaata 274  Q
    |||||||||||||||||||||||||| ||||||||||    
T  2544059 tgtcacacatatcaatgcataattttgatcttaaata 2544023  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 344
Target Start/End: Original strand, 29802749 - 29802788
Alignment:
Q  305 cattttcaaattaggtcatttaaaatgggatggatggagt 344  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  29802749 cattttcaaattaggtcatataaaatgggatggagggagt 29802788  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 16345400 - 16345364
Alignment:
Q  238 tgtcacacatatcaatgcataattttaatcttaaata 274  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  16345400 tgtcacacatatcaatgcacaattttgatcttaaata 16345364  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 26389189 - 26389240
Alignment:
Q  232 tgactctgtcacacatatcaatgcataattttaatcttaaatatatttaata 283  Q
    ||||||| ||||| |||||||  ||||||||||||||||||||| |||||||    
T  26389189 tgactctatcacatatatcaagacataattttaatcttaaatatttttaata 26389240  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 36662501 - 36662575
Alignment:
Q  201 tacttcttccatcctatattatacgacacagt-gactctgtcacacatatcaatgcataattttaatcttaaata 274  Q
    |||| ||||| || ||||||| | |||||||| |||  ||||||||||| ||||||| |||||||||||||||||    
T  36662501 tactccttccgtcatatattaaatgacacagtcgacattgtcacacataccaatgcacaattttaatcttaaata 36662575  T

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