View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7811_low_27 (Length: 360)
Name: NF7811_low_27
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 8258079 - 8257744
Alignment:
| Q |
19 |
tatttaactcaaccaattatattatgtcaaatatatttccaatatatgcaattttaaatcgtaatatctaacacataatcatcgttttcgcgggacatta |
118 |
Q |
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| T |
8258079 |
tatttaactcaaccaaatatattatgtcaaatgtatttccaatatatgcaattttaaatcgtaatatctaaaacataatcatcgttttcgcgggacatta |
8257980 |
T |
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| Q |
119 |
ctattgttctgtcaacataaagcatagaaaagaaagnnnnnnnngaatacattaaaggggtcaaataccatgtctgaaaatgcatgtcagcccccaagag |
218 |
Q |
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| T |
8257979 |
ctattgttctatcaacataaaacatagaaaagaaagaaaaaaaagaatacattaaaggagtcaaataccatgtatgaaaatgtatgtcagcccccaagag |
8257880 |
T |
|
| Q |
219 |
aggatcgtgattctaaacacacccctttcttatattcccatctattatctatccttttctaagatgtttgtcaaaagtgtggtggtcatgttacatcaaa |
318 |
Q |
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|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8257879 |
aggatcgtgattataaactcatccctttcttatattcccatctattatctatccttttctaagatgtttgtcaaaagtgtgatggtcatgttacatcaaa |
8257780 |
T |
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| Q |
319 |
gtttcatggtgtggtggaaattggctgaacacgaaa |
354 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
8257779 |
gtttcatggtgtggtggaaattggctgaacaagaaa |
8257744 |
T |
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