View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7811_low_28 (Length: 360)
Name: NF7811_low_28
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 346
Target Start/End: Complemental strand, 52112686 - 52112348
Alignment:
| Q |
8 |
ttggagtttcgaaagaagaagcggttcataatcttttatttgccacatgttttaattcatttggtgggatgaagannnnnnnncctaatttgttgaagtg |
107 |
Q |
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| T |
52112686 |
ttggagtttcgaaagaagaagcggttcataatcttttatttgccacatgttttaattcatttggtgggatgaagattttttttcctaatttgttgaagtg |
52112587 |
T |
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| Q |
108 |
gattggacgtggtggtgttaatctacaccgtaaattagcagaagagattcgatctgttgttaaatcaaatggcggaagagtgacaatggcggggatggaa |
207 |
Q |
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| T |
52112586 |
gattggacgtggtggtgttaatctacaccgtaaattagcagaagagattcgatctgttgttaaatcaaatggcggaagagtgacaatggcggggatggaa |
52112487 |
T |
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| Q |
208 |
aatatgccgttgatgaaatcagtggtgtatgaagcatttagaattgaaccaccagtaccgttacagtatggaaaagcgaaacatgattttgttattgaga |
307 |
Q |
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| T |
52112486 |
aatatgccgttgatgaaatcagtggtgtatgaagcatttagaattgaaccaccagtaccgttacagtatggaaaagcgaaacatgattttgttattgaga |
52112387 |
T |
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| Q |
308 |
atcatgaaaatgcttttcaagtgaaagaaggtgaaatgt |
346 |
Q |
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| T |
52112386 |
atcatgaaaatgcgtttcaagtgaaagaaggtgaaatgt |
52112348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 6533350 - 6533302
Alignment:
| Q |
33 |
tcataatcttttatttgccacatgttttaattcatttggtgggatgaag |
81 |
Q |
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| T |
6533350 |
tcataatctattattcgcaacatgttttaattcgtttggcgggatgaag |
6533302 |
T |
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