View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7811_low_29 (Length: 354)
Name: NF7811_low_29
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 2582394 - 2582057
Alignment:
| Q |
1 |
aaacccgaaagagaatcacaatcataagcttatcctcaataatcttcattggtgttgtaattgcagctgtattaggagttgttaactcaaaaaatgatga |
100 |
Q |
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| T |
2582394 |
aaacccgaaagagaatcacaatcataagcttatcttcaataatcttcattggtgttgtaattgcagctgtattaggagttgttaactcaaaaaatgatga |
2582295 |
T |
|
| Q |
101 |
tgataacaacaataatgcatctcaaaattcagtgactaattctatgaaagctgtttgtgatgttacattgtacaaagattcatgttataacagtcttagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2582294 |
tgataacaacaataatgcatctcaaaattcagtgactaattctatgaaagctgtttgtgatgttacattgtacaaagattcatgttataacagtcttagt |
2582195 |
T |
|
| Q |
201 |
tctattgttggctcaggaaaagaggttcaaccagaggagttgtttaagttatcaatcaatgttgcattaactcatgtgtctaaagctattgagtatttca |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
2582194 |
tctattgttggctcaggaaaagaggttcaacctgaggagttgtttaagttatcaatcaatgtagcattaactcatgtgtctaaagctgttgagtatttca |
2582095 |
T |
|
| Q |
301 |
atgaacatggtgttttcaaaaagttgatagaaaatagt |
338 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
2582094 |
atgaacatggtgttttcaaaaagttgatagaaaatagt |
2582057 |
T |
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