View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7811_low_3 (Length: 549)

Name: NF7811_low_3
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7811_low_3
NF7811_low_3
[»] chr7 (3 HSPs)
chr7 (18-538)||(38635135-38635655)
chr7 (201-509)||(38633574-38633881)
chr7 (63-120)||(38632444-38632498)
[»] chr1 (18 HSPs)
chr1 (195-459)||(19266704-19266962)
chr1 (195-368)||(19267265-19267439)
chr1 (402-509)||(35249914-35250021)
chr1 (416-493)||(45527121-45527198)
chr1 (207-254)||(35203181-35203228)
chr1 (207-254)||(45526202-45526249)
chr1 (402-504)||(35265654-35265756)
chr1 (207-251)||(8640315-8640359)
chr1 (207-254)||(35206425-35206472)
chr1 (207-254)||(35216972-35217019)
chr1 (207-254)||(35476995-35477042)
chr1 (411-505)||(35477271-35477365)
chr1 (207-257)||(45534406-45534456)
chr1 (208-257)||(35272922-35272971)
chr1 (207-254)||(35192841-35192888)
chr1 (207-254)||(35222789-35222836)
chr1 (208-251)||(35265360-35265403)
chr1 (206-251)||(35295215-35295260)
[»] chr2 (1 HSPs)
chr2 (201-251)||(33137662-33137712)


Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 538
Target Start/End: Original strand, 38635135 - 38635655
Alignment:
Q  18 tatacatgtgtactgagtatttaaagccattaattgagattttgatcatgatcattaatgcatgcacatgtattaattataaca---aactatggctatg 114  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  38635135 tatacatgtgtactgagtagttaaagccattaattgagattttgatcatgatcattaatgcatgcacatgtattaattataacaacaaactatggctatg 38635234  T
Q  115 aagtaaacactatacataatagaaaagttaagagcaaacctagaaggaggcatattagtattaggagcaacaagagcaccataaggaatgatgagagatt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38635235 aagtaaacactatacataatagaaaagttaagagcaaacctagaaggaggcatattagtattaggagcaacaagagcaccataaggaatgatgagagatt 38635334  T
Q  215 tagcagcaagaatgtaacacttttttccactctttctatctaaataaaagccctttgtaccatggtcgatgatgatagggtgatgggcatgagaataggg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38635335 tagcagcaagaatgtaacacttttttccactctttctatctaaataaaagccctttgtaccatggtcgatgatgatagggtgatgggcatgag-ataggg 38635433  T
Q  315 caagatagagagcctttttggtaaggaaaggactgtgtgagatgatagaggccaggaattccgggctggaaaggaggagaaaacgagtccagacttcgtc 414  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38635434 caagatagagagcctttttggtaaggaaaggac--tgtgagatgatagaggccaggaattccgagctggaaaggaggagaaaacgagtccagacttcgtc 38635531  T
Q  415 tgaatcggcggcagaactgaatgtcttagaaacgacggagagtctgcctgcatcaactggagtcatacgagacagtatgatggcaatgcactcttttggt 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  38635532 tgaatcggcggcagaactgaatgtcttagaaacgacggagagtctgcctgcattaactggagtcatacgagacagtatgatggcaatgcactctttcggt 38635631  T
Q  515 agtacctctaacgatgtcattctt 538  Q
    ||||||||||||||||||||||||    
T  38635632 agtacctctaacgatgtcattctt 38635655  T

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Target: chr7; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 201 - 509
Target Start/End: Original strand, 38633574 - 38633881
Alignment:
Q  201 aatgatgagagatttagcagcaagaatgtaacacttttttccactctttctatctaaataaaagccctttgtaccatggtcgatgatgatagggtgatgg 300  Q
    |||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||  || ||||||||| |||||||||||||  |  |    
T  38633574 aatgctgagagatttagcagcaaggatgcaacacttttttccactctttctatctaaataaaagccaattttaccatggttgatgatgatagggctaccg 38633673  T
Q  301 gcatgagaatagggcaagatagagagcctttttggtaaggaaaggactgtgtgagatgatagaggccaggaattccgggctggaaaggaggagaaaacga 400  Q
      || ||| ||||||||||||||  |||||||||||||| ||| || ||||||| || ||||| |||| |||||  |||  ||||| ||||||||||||     
T  38633674 cgatcaga-tagggcaagatagatggcctttttggtaagcaaaagattgtgtgaaataatagatgccatgaattgggggacggaaaagaggagaaaacgg 38633772  T
Q  401 gtccagacttcgtctgaatcggcggcagaactgaatgtcttagaaacgacggagagtctgcctgcatcaactggagtcatacgagacagtatgatggcaa 500  Q
     |||| || |||||  ||| ||||||||||  |||||||||| |||||| ||||||||| || || ||||| |||||| ||||||||||||| |||||||    
T  38633773 ttccatacatcgtcaaaattggcggcagaatggaatgtcttacaaacgagggagagtcttcccgcgtcaaccggagtcgtacgagacagtataatggcaa 38633872  T
Q  501 tgcactctt 509  Q
    |||||||||    
T  38633873 tgcactctt 38633881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 38632444 - 38632498
Alignment:
Q  63 tcatgatcattaatgcatgcacatgtattaattataacaaactatggctatgaagtaa 120  Q
    |||| ||||||||||||||||||   |||||||||||||||||||| |||||||||||    
T  38632444 tcataatcattaatgcatgcaca---attaattataacaaactatgtctatgaagtaa 38632498  T

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Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 195 - 459
Target Start/End: Original strand, 19266704 - 19266962
Alignment:
Q  195 ataaggaatgatgagagatttagcagcaagaatgtaacacttttttccactctttctatctaaataaaagccctttgtaccatggtcgatgatgataggg 294  Q
    |||||||||| |||||||| ||||  | |||||||||||||||| ||||||||||||||  ||||||||||| ||| ||||||||||||||||||||| |    
T  19266704 ataaggaatggtgagagatatagcc-cgagaatgtaacactttt-tccactctttctattcaaataaaagccatttttaccatggtcgatgatgatagag 19266801  T
Q  295 tgatgggcatgagaatagggcaagatagagagcctttttggtaaggaaaggactgtgtgagatgatagaggccaggaattccgggctggaaaggaggaga 394  Q
      ||||  || || ||| ||||||||||| ||| ||||||||||||||| || |||||||   ||||||||||| ||| |  | |  |||||||||||||    
T  19266802 aaatggatataag-ataaggcaagatagatagcttttttggtaaggaaacgattgtgtga---gatagaggccatgaactgagtgtcggaaaggaggaga 19266897  T
Q  395 aaacgagtccagacttcgtctgaatcggcggcagaactgaatgtcttagaaacgacggagagtct 459  Q
    ||| || |||||||   ||| ||||| |||| ||||| ||||||||||||||| | |||||||||    
T  19266898 aaatgattccagacaatgtcagaatcagcggtagaacggaatgtcttagaaacaatggagagtct 19266962  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 195 - 368
Target Start/End: Complemental strand, 19267439 - 19267265
Alignment:
Q  195 ataaggaatgatgagagatttagcagcaagaatgtaacacttttttccactctttctatctaaataaaagccctttgtaccatggtcgatgatgataggg 294  Q
    |||||||||  |||||||| ||||||||||||||||||||||||||||| | ||||||| |||||||| | ||||| | |  ||||| ||||||||||||    
T  19267439 ataaggaatagtgagagatctagcagcaagaatgtaacacttttttccattatttctatttaaataaatgaccttttttctttggtccatgatgataggg 19267340  T
Q  295 tgatgggcatgaga-atagggcaagatagagagcctttttggtaaggaaaggactgtgtgagatgatagaggcca 368  Q
    ||||||  || ||| ||| ||||||||||| | ||||| |||| ||||||||| |||||||||||||||||||||    
T  19267339 tgatggtaatcagagataaggcaagatagatatcctttatggttaggaaaggattgtgtgagatgatagaggcca 19267265  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 402 - 509
Target Start/End: Original strand, 35249914 - 35250021
Alignment:
Q  402 tccagacttcgtctgaatcggcggcagaactgaatgtcttagaaacgacggagagtctgcctgcatcaactggagtcatacgagacagtatgatggcaat 501  Q
    |||||||  |||| ||||| |||||||||| || |||||||||||||| |||||||||| | || ||||| |||||| | ||||| ||||||  ||||||    
T  35249914 tccagacggcgtcggaatcagcggcagaacggagtgtcttagaaacgagggagagtctgacggcgtcaacgggagtcgttcgagagagtatggcggcaat 35250013  T
Q  502 gcactctt 509  Q
    ||||||||    
T  35250014 gcactctt 35250021  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 45527121 - 45527198
Alignment:
Q  416 gaatcggcggcagaactgaatgtcttagaaacgacggagagtctgcctgcatcaactggagtcatacgagacagtatg 493  Q
    |||||||||||||||  ||| ||||| |||||||||||||||||||| || ||||| |||||| |||| |||||||||    
T  45527121 gaatcggcggcagaaaggaaagtcttcgaaacgacggagagtctgccggcgtcaacaggagtcgtacgtgacagtatg 45527198  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 35203181 - 35203228
Alignment:
Q  207 gagagatttagcagcaagaatgtaacacttttttccactctttctatc 254  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||    
T  35203181 gagagatctagcagcaagcatgtaacacttttttccactctttctatc 35203228  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 45526202 - 45526249
Alignment:
Q  207 gagagatttagcagcaagaatgtaacacttttttccactctttctatc 254  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||    
T  45526202 gagagatctagcagcaagcatgtaacacttttttccactctttctatc 45526249  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 402 - 504
Target Start/End: Original strand, 35265654 - 35265756
Alignment:
Q  402 tccagacttcgtctgaatcggcggcagaactgaatgtcttagaaacgacggagagtctgcctgcatcaactggagtcatacgagacagtatgatggcaat 501  Q
    |||||||  |||| ||||||| ||| || | ||| ||||| |||||||||||||||||||| || |||||||||||  ||||||| | |||| |||||||    
T  35265654 tccagacagcgtcggaatcggaggctgatcggaaagtctttgaaacgacggagagtctgccggcgtcaactggagttgtacgagagactatggtggcaat 35265753  T
Q  502 gca 504  Q
    |||    
T  35265754 gca 35265756  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 8640315 - 8640359
Alignment:
Q  207 gagagatttagcagcaagaatgtaacacttttttccactctttct 251  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||    
T  8640315 gagagatctagcagcaagcatgtaacacttttttccactctttct 8640359  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 35206425 - 35206472
Alignment:
Q  207 gagagatttagcagcaagaatgtaacacttttttccactctttctatc 254  Q
    ||||||| |||||| ||| |||||||||||||||||||||||||||||    
T  35206425 gagagatctagcagaaagcatgtaacacttttttccactctttctatc 35206472  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 35216972 - 35217019
Alignment:
Q  207 gagagatttagcagcaagaatgtaacacttttttccactctttctatc 254  Q
    ||||||| |||||| ||| |||||||||||||||||||||||||||||    
T  35216972 gagagatctagcagaaagcatgtaacacttttttccactctttctatc 35217019  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 35476995 - 35477042
Alignment:
Q  207 gagagatttagcagcaagaatgtaacacttttttccactctttctatc 254  Q
    ||||||| |||||||||| |||||||||||||| ||||||||||||||    
T  35476995 gagagatctagcagcaagcatgtaacactttttcccactctttctatc 35477042  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 505
Target Start/End: Original strand, 35477271 - 35477365
Alignment:
Q  411 cgtctgaatcggcggcagaactgaatgtcttagaaacgacggagagtctgcctgcatcaactggagtcatacgagacagtatgatggcaatgcac 505  Q
    |||| ||||| |||||| ||| ||||||||| ||||||||||||| |||||| || ||| |||||||  ||| ||| ||||||  ||||||||||    
T  35477271 cgtccgaatcagcggcacaacggaatgtcttggaaacgacggagaatctgccggcgtcagctggagtggtacaagatagtatggcggcaatgcac 35477365  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 45534406 - 45534456
Alignment:
Q  207 gagagatttagcagcaagaatgtaacacttttttccactctttctatctaa 257  Q
    ||||||| |||||||||| |||||||||||||| ||||| |||||||||||    
T  45534406 gagagatctagcagcaagcatgtaacactttttcccactatttctatctaa 45534456  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 35272922 - 35272971
Alignment:
Q  208 agagatttagcagcaagaatgtaacacttttttccactctttctatctaa 257  Q
    |||||| |||||| ||| |||||||||||||||||||||||||| |||||    
T  35272922 agagatctagcagaaagcatgtaacacttttttccactctttctctctaa 35272971  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 35192841 - 35192888
Alignment:
Q  207 gagagatttagcagcaagaatgtaacacttttttccactctttctatc 254  Q
    ||||||| |||||||||| || |||||||||||||||||||| |||||    
T  35192841 gagagatctagcagcaagcatataacacttttttccactcttcctatc 35192888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 35222789 - 35222836
Alignment:
Q  207 gagagatttagcagcaagaatgtaacacttttttccactctttctatc 254  Q
    ||||||| |||||||||| |||  ||||||||||||||||||||||||    
T  35222789 gagagatctagcagcaagcatgacacacttttttccactctttctatc 35222836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 35265360 - 35265403
Alignment:
Q  208 agagatttagcagcaagaatgtaacacttttttccactctttct 251  Q
    |||||| |||||| ||| ||||||||||||||||||||||||||    
T  35265360 agagatctagcagaaagcatgtaacacttttttccactctttct 35265403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 35295260 - 35295215
Alignment:
Q  206 tgagagatttagcagcaagaatgtaacacttttttccactctttct 251  Q
    |||||||| |||||||||| || ||||||||||| |||||||||||    
T  35295260 tgagagatctagcagcaagcatataacactttttcccactctttct 35295215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 33137712 - 33137662
Alignment:
Q  201 aatgatgagagatttagcagcaagaatgtaacacttttttccactctttct 251  Q
    |||| |||||||| |||||||||| ||||||||||||| ||||||||||||    
T  33137712 aatggtgagagatctagcagcaagcatgtaacacttttgtccactctttct 33137662  T

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