View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7811_low_31 (Length: 349)
Name: NF7811_low_31
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_low_31 |
 | |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
| [»] scaffold1843 (1 HSPs) |
| | |
|
| [»] scaffold0281 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0050 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 46 - 330
Target Start/End: Complemental strand, 7162 - 6878
Alignment:
| Q |
46 |
tagaaaaataataaatgtcttcaatgctattaattttactgcaattttatcaaccaaagaaattcgacactaatttcattcctaaaaatttatgatcctt |
145 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7162 |
tagaaaaataatcaatgtcttcaatgctattaattttactgcaattttatcaaccaaaaaaattcgacactaatttcattcctaaaaatttatgatcctt |
7063 |
T |
|
| Q |
146 |
tgattttaaagaaatcaatctccacggtttatgcaaagattcattctacccacattagtatataaaggaagcattgctacatcaaaaaatcaccacaatt |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7062 |
tgattttaaagaaatcaatctccacggtttatgcaaagattcattctacccacattagtatataaaggaagcattgctacatcaaaaaaccaccacaatt |
6963 |
T |
|
| Q |
246 |
gaaatctctactttcaacctctttctcttttcttttatctccctcatatacttaattatgtattgctactttctttatttcatat |
330 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6962 |
gaagtctctactttcaacctcattctcttttcttttatctccctcatatacttaattatgtattgctactttctttatttcatat |
6878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 23 - 331
Target Start/End: Complemental strand, 12730015 - 12729707
Alignment:
| Q |
23 |
ccatgctctatgctaaattattatagaaaaataataaatgtcttcaatgctattaattttactgcaattttatcaaccaaagaaattcgacactaatttc |
122 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12730015 |
ccatgttctatgctaaattattatagaaaaataatcaatgtcttcaatgctattgattttactgcaattttatcaaccaaaaaaattcgacactaatttc |
12729916 |
T |
|
| Q |
123 |
attcctaaaaatttatgatcctttgattttaaagaaatcaatctccacggtttatgcaaagattcattctacccacattagtatataaaggaagcattgc |
222 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12729915 |
attcctaaaaatttataatcctttggttttaaagaaatcaatctccacggtttatgcaaagattcattctacccacatcagtatataaaggaagcattgc |
12729816 |
T |
|
| Q |
223 |
tacatcaaaaaatcaccacaattgaaatctctactttcaacctctttctcttttcttttatctccctcatatacttaattatgtattgctactttcttta |
322 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12729815 |
tacataaaaaaaccaccacaattgaaatctctactttcaacctcattcttttttcttttatctccctcatatactcaattatgtattgctactttcttta |
12729716 |
T |
|
| Q |
323 |
tttcatatt |
331 |
Q |
| |
|
||||||||| |
|
|
| T |
12729715 |
tttcatatt |
12729707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1843 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold1843
Description:
Target: scaffold1843; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 91 - 331
Target Start/End: Original strand, 1 - 241
Alignment:
| Q |
91 |
tttatcaaccaaagaaattcgacactaatttcattcctaaaaatttatgatcctttgattttaaagaaatcaatctccacggtttatgcaaagattcatt |
190 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1 |
tttatcaaccaaaaaaattcgacactaatttcattcctaaaaatttataatcctttggttttaaagaaatcaatctccacggtttatgcaaagattcatt |
100 |
T |
|
| Q |
191 |
ctacccacattagtatataaaggaagcattgctacatcaaaaaatcaccacaattgaaatctctactttcaacctctttctcttttcttttatctccctc |
290 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
101 |
ctacccacatcagtatataaaggaagcattgctacataaaaaaaccaccacaattgaaatctctactttcaacctcattcttttttcttttatctccctc |
200 |
T |
|
| Q |
291 |
atatacttaattatgtattgctactttctttatttcatatt |
331 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
201 |
atatactcaattatgtattgctactttctttatttcatatt |
241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 12489 - 12533
Alignment:
| Q |
287 |
cctcatatacttaattatgtattgctactttctttatttcatatt |
331 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12489 |
cctcatatactcaattatgtattgctactttctttatttcatatt |
12533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University