View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7811_low_36 (Length: 326)
Name: NF7811_low_36
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 18278657 - 18278966
Alignment:
| Q |
1 |
tctattacaaacctcgaacttgaagcatcctatgtaatttagccttaaatttgtttcaatctttacgtcagattactacaattgtggacacaactttaaa |
100 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18278657 |
tctattacaaacctcaaacttgaaatatcctatgtaatttagacttaaatttgtttcaatctttacctcagattactacaattgtggacacaactttaaa |
18278756 |
T |
|
| Q |
101 |
gtcctcgtagttatgcgag-catgacaattaaaactctctctatcttccctgcttctatatatcttctctaaatctatcaaaacaaacagacaaattaat |
199 |
Q |
| |
|
|||||| | |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18278757 |
gtcctctt-gttatgcgagtcatgacaattaaaactctctctatcttccctacttctatatatcttctctaaatctatcaaaacaaacagacaaattaat |
18278855 |
T |
|
| Q |
200 |
ttttcctttccccattttaaccggtggccaaacctctctcactcgcaactctttccgccaccgtaactgccatttcccggcaacctcttcacgtttatca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18278856 |
ttttcctttccccattttaaccggtggccaaacctctctcactcgcaaccctttccgccaccgtaactgccattttccggcaacctcttcacgtttatcg |
18278955 |
T |
|
| Q |
300 |
atggcaaaagc |
310 |
Q |
| |
|
||||||||||| |
|
|
| T |
18278956 |
atggcaaaagc |
18278966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 152 - 274
Target Start/End: Complemental strand, 8297892 - 8297777
Alignment:
| Q |
152 |
cttctatatatcttctctaaatctatcaaaacaaacagacaaattaatttttcctttccccattttaaccggtggccaaacctctctcactcgcaactct |
251 |
Q |
| |
|
||||||| |||||||||| | ||||||||||||||||||| |||||||||||| |||||||| ||||||| |||||||| ||||||||| || |
|
|
| T |
8297892 |
cttctatttatcttctctcattctatcaaaacaaacagaccc-------tttcctttcccctttttaaccagtggccacacctctcttactcgcaaccct |
8297800 |
T |
|
| Q |
252 |
ttccgccaccgtaactgccattt |
274 |
Q |
| |
|
|||||||||||||| || ||||| |
|
|
| T |
8297799 |
ttccgccaccgtaattgtcattt |
8297777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University