View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7811_low_37 (Length: 325)
Name: NF7811_low_37
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 34753135 - 34753399
Alignment:
| Q |
18 |
aacatcaacttcttcttgctcgtgcaacttttcctcaccggcgggactggataagaattagacaagatccaagattcaatggtctgtttggtcagatgac |
117 |
Q |
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| T |
34753135 |
aacatcaacttcttcttgctcgtgcaacttttcctcaccggcgggactggataagaattagacaagatccaagattcaatggtctgtttggtcagatgac |
34753234 |
T |
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| Q |
118 |
tgtggacgctttacgcgtaagtggtttctcaattaacgtgcatttcactgttatgatacgtttggcttcgatttttgtcagtttttagtgattttgatta |
217 |
Q |
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| T |
34753235 |
tgtggacgctttgcgcgtaagtggtttctcaattaacgtgcatttcactgttatgatacgtttggcttcgatttttgtcagtttttagtgattttgatta |
34753334 |
T |
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| Q |
218 |
aaaacctttttgtcatattaatcgtatcatgaatttcttcctcgttcaagtatgctgttcttatg |
282 |
Q |
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| T |
34753335 |
gaaacctttttgtcatattaattgtataatgaatttcttcctcgttcaagcatgctgttcttatg |
34753399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 34753553 - 34753698
Alignment:
| Q |
180 |
tggcttcgatttttgtcagtttttagtgattttgattaaaaacctttttgtcatattaatcgtatcatgaatttcttcctcgttcaagtatgctgttctt |
279 |
Q |
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| T |
34753553 |
tggcttcgatttttgtcagtttttagtgattttgattagaaacctttttgtcatattaatcgtatcatgaatttcttcctcgttcaagcatgctgttctt |
34753652 |
T |
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| Q |
280 |
atgttttcgggttgtttgtagcggttagtaggagagtttacatcca |
325 |
Q |
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| T |
34753653 |
atgttttcgggttgtttgtagcggttagtaggagagtttacatcca |
34753698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 178 - 282
Target Start/End: Original strand, 34753423 - 34753527
Alignment:
| Q |
178 |
tttggcttcgatttttgtcagtttttagtgattttgattaaaaacctttttgtcatattaatcgtatcatgaatttcttcctcgttcaagtatgctgttc |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
34753423 |
tttggcttcgatttttgtcagtttttagtgattttgatcagaaacctttttgccatattaattgtatcatgaatttcttcctcgttcaagcatgctgttc |
34753522 |
T |
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| Q |
278 |
ttatg |
282 |
Q |
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||||| |
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| T |
34753523 |
ttatg |
34753527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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