View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7811_low_40 (Length: 305)

Name: NF7811_low_40
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7811_low_40
NF7811_low_40
[»] chr4 (9 HSPs)
chr4 (18-294)||(36940381-36940657)
chr4 (116-294)||(35097820-35097998)
chr4 (116-294)||(35098109-35098287)
chr4 (116-294)||(35106998-35107176)
chr4 (116-294)||(35072684-35072862)
chr4 (116-294)||(36296457-36296635)
chr4 (116-229)||(36935861-36935975)
chr4 (117-294)||(36961367-36961545)
chr4 (191-237)||(36953720-36953766)
[»] chr6 (2 HSPs)
chr6 (116-294)||(24040740-24040918)
chr6 (116-294)||(24014183-24014361)
[»] chr5 (1 HSPs)
chr5 (161-259)||(34919131-34919229)


Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 36940381 - 36940657
Alignment:
Q  18 ctttcttacacacacatgacacaaaacttattacattaaagcaaagaaacacaattctaaactgcaaaacaaagtaagagaactcaatttgtacttagcc 117  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  36940381 ctttcttacacacacagaacacaaaacttattacattaaagcaaagaaacacaattctaaactgcaaaacaaagtaagagaactcaatttgtactttacc 36940480  T
Q  118 agagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatccatt 217  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36940481 agagatatcaatggttttaacttcatgattcttgatctcttttttaggcacagtgacagtgagaatgccattctccattgcagctttcatttgatccatt 36940580  T
Q  218 ttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttctt 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36940581 ttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttctt 36940657  T

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Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 116 - 294
Target Start/End: Complemental strand, 35097998 - 35097820
Alignment:
Q  116 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 215  Q
    |||||||| |||||||  ||||| ||| | ||||| ||||||| ||| || ||||| ||||||||||| |||||||||||||||||||||| ||| ||||    
T  35097998 ccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtcca 35097899  T
Q  216 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttctt 294  Q
    |||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  35097898 ttttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttctt 35097820  T

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Target: chr4; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 116 - 294
Target Start/End: Complemental strand, 35098287 - 35098109
Alignment:
Q  116 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 215  Q
    |||||||| |||||||  ||||| ||| | ||||| ||||||| ||| || ||||| ||||||||||| |||||||||||||||||||||| ||| ||||    
T  35098287 ccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtcca 35098188  T
Q  216 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttctt 294  Q
    |||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  35098187 ttttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttctt 35098109  T

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Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 116 - 294
Target Start/End: Complemental strand, 35107176 - 35106998
Alignment:
Q  116 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 215  Q
    |||||||| ||||||| ||| |||||| | ||||| |||||||  ||||| |||||||||| |||||| ||||||||||| |||||||||| ||||||||    
T  35107176 ccagagatttcaatggctttgacttcaggcttcttgatctcttccttagggacagtgacagcgagaacaccattctccatagcagctttcacttgatcca 35107077  T
Q  216 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttctt 294  Q
    |||| |||||||| || ||||| || ||||||||||| || |||||||||||||||||  ||||||||||||| |||||    
T  35107076 ttttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattctt 35106998  T

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Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 294
Target Start/End: Original strand, 35072684 - 35072862
Alignment:
Q  116 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 215  Q
    |||||||| || ||||  ||||| ||| | |||||||  |||| ||| || ||||| ||||||||||| |||||||||||||||||||||| ||||||||    
T  35072684 ccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatcca 35072783  T
Q  216 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttctt 294  Q
    |||| |||||||| ||  |||| || ||||||||||| || |||||||||||||||||  ||||||||||||| |||||    
T  35072784 ttttcgcattctctggttatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattctt 35072862  T

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Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 116 - 294
Target Start/End: Original strand, 36296457 - 36296635
Alignment:
Q  116 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 215  Q
    |||||||| ||||| |  ||||| ||| | |||||||  |||| ||| || ||||| ||||||||||| ||||||||||||||||||||||  |||||||    
T  36296457 ccagagatctcaatagacttaacatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccattgcagctttcacctgatcca 36296556  T
Q  216 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttctt 294  Q
    | || ||||| || |||||||| || |||||||| ||||| |||||||||||||||||| |||||||||| | ||||||    
T  36296557 tcttggcattttcgggcaatctgaacctcctcataaactttccactgctacgctccacgcgatgccattggttgttctt 36296635  T

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Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 36935861 - 36935975
Alignment:
Q  116 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctcc-attgcagctttcatttgatcc 214  Q
    ||||||||||||||||| || |||||| | ||||||| ||||| ||  ||||| || ||||||||||| ||||||||| ||||||||||||| |||||||    
T  36935861 ccagagatatcaatggtcttcacttcaggcttcttaacctcttcttgtggcacggtaacagtgagaacaccattctccaattgcagctttcacttgatcc 36935960  T
Q  215 attttagcattctca 229  Q
    |||||||||||||||    
T  36935961 attttagcattctca 36935975  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 294
Target Start/End: Complemental strand, 36961545 - 36961367
Alignment:
Q  117 cagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgca-gctttcatttgatcca 215  Q
    |||||||||||||||| |||||| || | || || |  ||||  ||||| | ||| ||||||||||| |||||||||  ||   || ||||  |||||||    
T  36961545 cagagatatcaatggtcttaactccaggttttttcacttcttccttaggaatagttacagtgagaacaccattctcccatgtttgcattcacctgatcca 36961446  T
Q  216 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttctt 294  Q
    | ||||||||||| | |||||| ||  |||||||||| |||||||||||| ||||||||  |||||||| || ||||||    
T  36961445 tcttagcattctctgccaatctaaacttcctcatgaatttcccactgctaagctccacgcaatgccattcattgttctt 36961367  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 36953720 - 36953766
Alignment:
Q  191 tccattgcagctttcatttgatccattttagcattctcaggcaatct 237  Q
    |||||||||||||||| ||||||| |||||||||| |||||||||||    
T  36953720 tccattgcagctttcacttgatccgttttagcattgtcaggcaatct 36953766  T

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Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 116 - 294
Target Start/End: Original strand, 24040740 - 24040918
Alignment:
Q  116 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 215  Q
    ||||||||||||||||| || |||| | | |||||||  ||||  ||||| ||||||||||||||||  |||||||||||||||||||||| ||||||||    
T  24040740 ccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaataccattctccattgcagctttcacttgatcca 24040839  T
Q  216 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttctt 294  Q
    |||| |||||||| || ||||| || ||||||||||| || |||||||||||||||||  ||||||||||||| |||||    
T  24040840 ttttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattctt 24040918  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 116 - 294
Target Start/End: Original strand, 24014183 - 24014361
Alignment:
Q  116 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 215  Q
    |||||||| || ||||  ||||| ||| | |||||||  |||| ||| || ||||| ||||||||||| |||||||||||||||||||||| ||||||||    
T  24014183 ccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatcca 24014282  T
Q  216 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttctt 294  Q
    |||| ||||| || ||||| || ||||||||||||||||| || ||||| ||||||||  |||||||||||||||||||    
T  24014283 ttttcgcattttcgggcaacctgaatctcctcatgaactttccgctgctgcgctccacacgatgccattgatcgttctt 24014361  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 259
Target Start/End: Complemental strand, 34919229 - 34919131
Alignment:
Q  161 ttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatccattttagcattctcaggcaatcttaatctcctcatgaacttccca 259  Q
    ||||| ||||| ||||| ||||| |||||||||||  ||||||| |  |||||||||||| ||||||||||||| || || |||||||| |||||||||    
T  34919229 ttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatccattttaacattctcaggcaacctaaacctcctcataaacttccca 34919131  T

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