View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7811_low_42 (Length: 291)
Name: NF7811_low_42
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_low_42 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 52517088 - 52517368
Alignment:
| Q |
1 |
aatagcatatcacaaaataatagcaattagttcaaattccactactctatagtattgtagtgccgatgtagccactaattaacaacagtagggtaggggt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
52517088 |
aataacatatcacaaaataatagcaattagttcaaattccactactctatagtgttgtagtgccgacgtagccactaattaacaacagtagggtaggggt |
52517187 |
T |
|
| Q |
101 |
aagctatatttattaattaacttcaatagaaatttagaatagttcaccccccaatatcccgacaggttaaaaactatagatatggggtggaaatggatag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52517188 |
aagctatatttattaattaacttcaatagaaatttagaatagttcaccccccaatatcccgacaggttaaaaactatagatatggggtggaaatggatag |
52517287 |
T |
|
| Q |
201 |
aacttttaagatttcataacctcacatcctatttcagacagtccaaacaattgcaactacaatttgctcccttcatctcac |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52517288 |
aacttttaagatttcataacctcacatcctatttcagacagtccaaacaattgcaactacaatttgctcccttcatttcac |
52517368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 7982371 - 7982407
Alignment:
| Q |
8 |
tatcacaaaataatagcaattagttcaaattccacta |
44 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
7982371 |
tatcacaaaacaatagcaatttgttcaaattccacta |
7982407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2732973 - 2732921
Alignment:
| Q |
1 |
aatagcatatcacaaaataatagcaattagttcaaattccactactctatagt |
53 |
Q |
| |
|
||||||||||| ||||| |||||| ||| ||||||||| |||||| ||||||| |
|
|
| T |
2732973 |
aatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagt |
2732921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 31322676 - 31322632
Alignment:
| Q |
8 |
tatcacaaaataatagcaattagttcaaattccactactctatag |
52 |
Q |
| |
|
||||||| ||||||| ||||| |||||||||||||||| |||||| |
|
|
| T |
31322676 |
tatcacagaataataacaatttgttcaaattccactacgctatag |
31322632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 39064895 - 39064935
Alignment:
| Q |
12 |
acaaaataatagcaattagttcaaattccactactctatag |
52 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||| |||||| |
|
|
| T |
39064895 |
acaaaacaatagcaatttgttcaaattccactacgctatag |
39064935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 41631908 - 41631944
Alignment:
| Q |
1 |
aatagcatatcacaaaataatagcaattagttcaaat |
37 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
41631908 |
aatagcatatcacaaaacaatagcaatttgttcaaat |
41631944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University