View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7811_low_43 (Length: 277)
Name: NF7811_low_43
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 36463318 - 36463490
Alignment:
| Q |
15 |
cattatgcaagcctcatgcttcatattatgttgcctcaagattcatatgacaccaattcctccttgccataacaaaacaatctta------atcatcatc |
108 |
Q |
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| T |
36463318 |
cattatgcaagcctcaagcttcatattatattgccttaagattcatatgacaacaattcttccttgccacaacaaaacaatcttaatcatcatcatcatc |
36463417 |
T |
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| Q |
109 |
tctcgcatatatcacaatgctctatatttatcttgctaatttaaaacaatcatctgcctacttgctcatgatt |
181 |
Q |
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| T |
36463418 |
tctcgcagatatcacaatgctctatatttgtcttcctaatttaaaacaatcatctgcctacttgctcatgatt |
36463490 |
T |
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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 30764337 - 30764272
Alignment:
| Q |
183 |
tgaatcacattgtggtt-actaaggtacttctattcttctctttagcttattcacttatgttttta |
247 |
Q |
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|||||||| |||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
30764337 |
tgaatcacgttgtggtttactaaggtacttttattcttctctttagctcattcacttatgttttta |
30764272 |
T |
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