View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7811_low_44 (Length: 275)
Name: NF7811_low_44
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 33866924 - 33866683
Alignment:
| Q |
16 |
ttaaaccatgtaaatcaccaatttaagaaagataagaatacacaactaaattattgaagattttgtccaataacttctaattataaaaatgttacctctc |
115 |
Q |
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| T |
33866924 |
ttaaaacatgtaaatcaccaatttaagaaagataagaatacacaactaaattattaaagattttgtccaataacttctaattataaaaatgttacctctc |
33866825 |
T |
|
| Q |
116 |
attgaaggatttacctcctctatgcatgtcagcagttggtaatgcacattcttttcttgagagaagtgaactcttaagtgaaacaaaaatcaaactttta |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
33866824 |
attgaaggatttacctcctctatgcatgtcagcagttggtaatgcacattcttttcttgagagaagtgaactcttaagtgaaatacaaatcaaactttta |
33866725 |
T |
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| Q |
216 |
tgattgtgcatcatcatgatgtatgtcaaaatgatttaattt |
257 |
Q |
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| T |
33866724 |
tgattctgcatcatcatgatgtatgtcaaaatgatttaattt |
33866683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 5771128 - 5771369
Alignment:
| Q |
16 |
ttaaaccatgtaaatcaccaatttaagaaagataagaatacacaactaaattattgaagattttgtccaataacttctaattataaaaatgttacctctc |
115 |
Q |
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| T |
5771128 |
ttaaaacatgtaaatcaccaatttaagaaagataagaatacacaactaaattattaaagattttgtccaataacttctaattataaaaacgttacctctc |
5771227 |
T |
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| Q |
116 |
attgaaggatttacctcctctatgcatgtcagcagttggtaatgcacattcttttcttgagagaagtgaactcttaagtgaaacaaaaatcaaactttta |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
5771228 |
attgaaggatttacctcctctatgcatgtcagcagttggtaatgcacattcttttcttgagagaagtgaactcttaagtgaaatacaaatcaaactttta |
5771327 |
T |
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| Q |
216 |
tgattgtgcatcatcatgatgtatgtcaaaatgatttaattt |
257 |
Q |
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| T |
5771328 |
tgattctgcataatcatgatgtatgtcaagatggtttaattt |
5771369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 5894501 - 5894561
Alignment:
| Q |
16 |
ttaaaccatgtaaatcaccaatttaagaaaga--taagaatacacaactaaattattgaag |
74 |
Q |
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||||||| |||| ||||||||||||||| ||| |||||||||||| |||||||||||||| |
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| T |
5894501 |
ttaaaccgtgtatatcaccaatttaagagagagataagaatacacacctaaattattgaag |
5894561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 5894555 - 5894614
Alignment:
| Q |
116 |
attgaaggatttacctcctctatgcatgtcagcagttggtaatgcacattcttttcttga |
175 |
Q |
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||||||||||||||||||| |||| || ||| ||||||||||||||||||||||||| |
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| T |
5894555 |
attgaaggatttacctcctttatgttggttagcgattggtaatgcacattcttttcttga |
5894614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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