View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7811_low_47 (Length: 257)
Name: NF7811_low_47
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 52517010 - 52516768
Alignment:
| Q |
1 |
atacacgattgataaaattgacttacccaccattttgattctcaaataatgaaatggaaacctagttccccaatgaaacaatcaaacaatggaataggga |
100 |
Q |
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| T |
52517010 |
atacacgattgataaaattgacttacccaccattttgattctcaaataatgaaatggaaacctagttcctcaatgaaacaatcaaacaatggaataggga |
52516911 |
T |
|
| Q |
101 |
ttttacttaattttcatttgattttatcctatctgattccatttctctaatcgttcaatagttttcaatctagatatatggtacatatatggttaagtag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52516910 |
ttttacttaattttcatttgattttatcctatctgattccatttctctaatcgttcaatagttttcaatctagatatatggtacatatatggttaagtag |
52516811 |
T |
|
| Q |
201 |
atgtatgtttaatatgttatctttctcctaggaatgatgttcc |
243 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
52516810 |
atgtatgtttaatatgttatctttctcctaggagtgatgttcc |
52516768 |
T |
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