View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7811_low_5 (Length: 536)
Name: NF7811_low_5
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 532
Target Start/End: Original strand, 23410311 - 23410825
Alignment:
| Q |
18 |
agaaactgttatttcgtatctttaatttcatttgtttatggttgcttttgaagatagaattctttttctctattactagtagtaatctatgcacttctgt |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23410311 |
agaaactgttatttcgtatctttaatttcatttctttatggttgcttttgaagattgaattctttttctctattactagtagtaatctatgcacttctgt |
23410410 |
T |
|
| Q |
118 |
ttcttgattttttgaaacaatagcgattttagatatatgatttaaaaacaagtgagattcacaagtatttgtgtttttataatttattattgatggtgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23410411 |
ttcttgattttttgaaacaatagcgattttagatatatgatttaaaaacaagtgagtttcacaagtatttgtgttgttataatttattattgatggtgtt |
23410510 |
T |
|
| Q |
218 |
tttgttatcatgttttacttattcgtggaactttgttaggttactgaagataaagaaacaaaggagtattgaagatggaaagacaaaataaacgcgttgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23410511 |
tttgttatcatgttttacttattcgtggaactttgttaggttaccgaagataaagaaacaaaggagtattgaagatggaaagacaaaataaacgcgttgt |
23410610 |
T |
|
| Q |
318 |
agacgcagacagactcagtgaccttcctgaccatgtccttcttcatatcattgaatttatgaacataaaacaatctgttcagacctgcgttctgtctaaa |
417 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23410611 |
agacacagacagactcagtgaccttcctgaccatgtccttcttcatatcattgaatctatgaacataaaacaatctgttcagacctgcgttctgtctaaa |
23410710 |
T |
|
| Q |
418 |
cgatggaaggacctttggaaacatctcaccaatctaaagttcaatcattcctaccctgacaattgtgatatgttctgcaaatttgtgtcccagattttgt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23410711 |
cgatggaaggacctttggaaacatctcaccaatctaaagttccatcattcctaccctgacaatagtgatatgttctgcaaatttgtgtcccagattttgt |
23410810 |
T |
|
| Q |
518 |
ctggtcgcaaccact |
532 |
Q |
| |
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||||||||||||||| |
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| T |
23410811 |
ctggtcgcaaccact |
23410825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 208 - 527
Target Start/End: Complemental strand, 23273761 - 23273442
Alignment:
| Q |
208 |
tgatggtgtttttgttatcatgttttacttattcgtggaactttgttaggttactgaagataaagaaacaaaggagtattgaagatggaaagacaaaata |
307 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23273761 |
tgatgctgtttttgttatcatgttttacttattcgtggaactttgttaggttaccgaagataaagaaacaaaggagtattgaagatggaaagacaaaata |
23273662 |
T |
|
| Q |
308 |
aacgcgttgtagacgcagacagactcagtgaccttcctgaccatgtccttcttcatatcattgaatttatgaacataaaacaatctgttcagacctgcgt |
407 |
Q |
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||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23273661 |
aacacgttgtagacacagacagactcagtgaccttcctgaccatgtccttcttcatatcattgaatttatgaacataaaacaatctgttcagacttgcgt |
23273562 |
T |
|
| Q |
408 |
tctgtctaaacgatggaaggacctttggaaacatctcaccaatctaaagttcaatcattcctaccctgacaattgtgatatgttctgcaaatttgtgtcc |
507 |
Q |
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||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| ||||||||||||||| |||| || || | |||||| |||||| |
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| T |
23273561 |
tctgtctaaacgatggaagaacctttggaaacatctcactaatctaaagttgcatcactcctaccctgacaatagtgaaatctttttcaaattcgtgtcc |
23273462 |
T |
|
| Q |
508 |
cagattttgtctggtcgcaa |
527 |
Q |
| |
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||||||||| ||||||||| |
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| T |
23273461 |
cagattttgagtggtcgcaa |
23273442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 23274087 - 23273883
Alignment:
| Q |
18 |
agaaactgttatttcgtatctttaatttcatttgttta-----tggttgcttttgaagatagaattctttttctctattactagtagtaatctatgcact |
112 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23274087 |
agaaactgttatttcgtatctttaatttcatttgtttaatttatggttgcttttgaagattgaattctttttctctattactagtagtaatctatgcact |
23273988 |
T |
|
| Q |
113 |
tctgtttcttgattttttgaaacaatagcgattttagatatatgatttaaaaacaagtgagattcacaagtatttgtgtttttataatttattattgatg |
212 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
23273987 |
tctgtttcttgattttttgaaacaatagcgattttagatatatgatttaaaaacaagtgagtttcacaagtatttgtgtttttttaatttattattgatg |
23273888 |
T |
|
| Q |
213 |
gtgtt |
217 |
Q |
| |
|
||||| |
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|
| T |
23273887 |
gtgtt |
23273883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 330 - 524
Target Start/End: Original strand, 24985676 - 24985870
Alignment:
| Q |
330 |
actcagtgaccttcctgaccatgtccttcttcatatcattgaatttatgaacataaaacaatctgttcagacctgcgttctgtctaaacgatggaaggac |
429 |
Q |
| |
|
|||||||||||| ||||||||| | ||| | ||||| |||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
24985676 |
actcagtgacctgcctgaccatctgcttttgcatataattgaatttatgaacactaaacaatctgttcagacatgcgtcttgtctaaacgatggaaggac |
24985775 |
T |
|
| Q |
430 |
ctttggaaacatctcaccaatctaaagttcaatcattcctaccctgacaattgtgatatgttctgcaaatttgtgtcccagattttgtctggtcg |
524 |
Q |
| |
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||||||||| ||| ||| ||||| ||||| ||| |||||||| ||||| || || |||||||||||||||||||||||| ||||| |||| |
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| T |
24985776 |
ctttggaaaaatcgcactaatctcaagtttcttcactcctacccagacaaaagtcctaccttctgcaaatttgtgtcccagattctgtcttgtcg |
24985870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 334 - 458
Target Start/End: Complemental strand, 34776665 - 34776541
Alignment:
| Q |
334 |
agtgaccttcctgaccatgtccttcttcatatcattgaatttatgaacataaaacaatctgttcagacctgcgttctgtctaaacgatggaaggaccttt |
433 |
Q |
| |
|
||||| || ||||||||||||||||| ||||| |||||||||||||| |||| ||||||||||| ||| || ||| ||||||||||||||||| || ||| |
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| T |
34776665 |
agtgaactgcctgaccatgtccttctgcatataattgaatttatgaatataagacaatctgttcggacttgtgttttgtctaaacgatggaagaacgttt |
34776566 |
T |
|
| Q |
434 |
ggaaacatctcaccaatctaaagtt |
458 |
Q |
| |
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||||| |||||| ||||| ||||| |
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|
| T |
34776565 |
ggaaaagtctcactaatctcaagtt |
34776541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 334 - 438
Target Start/End: Complemental strand, 34800597 - 34800493
Alignment:
| Q |
334 |
agtgaccttcctgaccatgtccttcttcatatcattgaatttatgaacataaaacaatctgttcagacctgcgttctgtctaaacgatggaaggaccttt |
433 |
Q |
| |
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||||| || ||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| || ||| ||||||||||||||||| ||||| |
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| T |
34800597 |
agtgaactgcctgaccatgtccttctgcatataattgaatttatgaatataaagcaatctgttcagacttgtgttttgtctaaacgatggaagagccttt |
34800498 |
T |
|
| Q |
434 |
ggaaa |
438 |
Q |
| |
|
||||| |
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|
| T |
34800497 |
ggaaa |
34800493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 320 - 452
Target Start/End: Complemental strand, 2563909 - 2563777
Alignment:
| Q |
320 |
acgcagacagactcagtgaccttcctgaccatgtccttcttcatatcattgaatttatgaacataaaacaatctgttcagacctgcgttctgtctaaacg |
419 |
Q |
| |
|
||||||||||||||||||| || || ||||| | ||||| ||||| |||||||||||||||||||| ||| ||||||| || ||| |||||||||| |
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| T |
2563909 |
acgcagacagactcagtgatctgccgaaccatcttcttctgcatatatttgaatttatgaacataaaatgttctattcagacttgtgttttgtctaaacg |
2563810 |
T |
|
| Q |
420 |
atggaaggacctttggaaacatctcaccaatct |
452 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |
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|
| T |
2563809 |
ttggaaggacctttggaaaagtctcactaatct |
2563777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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