View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7811_low_52 (Length: 252)
Name: NF7811_low_52
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 37596841 - 37596691
Alignment:
| Q |
33 |
aataactgatattctttttaaaaacttggaaacttcnnnnnnncaaagcaattttttcctccatataagttgaaatgtgaaaaggaaaaatcatattata |
132 |
Q |
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| T |
37596841 |
aataactgatattctttttaaaaacttggaaacttcaaaaaaacaaagcaattttttcctccatataagttgaaatgtgaaaaggaaaaatcatattata |
37596742 |
T |
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| Q |
133 |
ctttctcagttaactaaacacataaagtaagaaataaaaaagaaataatttca |
185 |
Q |
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| T |
37596741 |
ctttctcagttaactaa--acataaagtaagaaataaaaaagaaataatttca |
37596691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 37596702 - 37596661
Alignment:
| Q |
211 |
gaaataatttcattgatcagcttacttatgatttgacatatt |
252 |
Q |
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| T |
37596702 |
gaaataatttcattgatcagcttacttatgatttgacatatt |
37596661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 37596896 - 37596862
Alignment:
| Q |
1 |
ccaattgtaggaatttccttttttggagaagtaat |
35 |
Q |
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| T |
37596896 |
ccaattgtaggaatttccttttttggagaagtaat |
37596862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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