View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7811_low_55 (Length: 249)

Name: NF7811_low_55
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7811_low_55
NF7811_low_55
[»] chr5 (11 HSPs)
chr5 (1-242)||(24854225-24854466)
chr5 (13-202)||(1709610-1709799)
chr5 (81-242)||(6431026-6431184)
chr5 (30-155)||(5337057-5337179)
chr5 (71-201)||(27950119-27950248)
chr5 (83-196)||(41614752-41614864)
chr5 (150-201)||(5342537-5342588)
chr5 (94-164)||(27949443-27949512)
chr5 (126-192)||(28335971-28336037)
chr5 (20-115)||(31470560-31470655)
chr5 (109-181)||(15812120-15812191)
[»] chr7 (13 HSPs)
chr7 (1-242)||(15030913-15031154)
chr7 (13-202)||(7253593-7253781)
chr7 (13-202)||(26793415-26793604)
chr7 (14-242)||(110272-110500)
chr7 (13-202)||(41792766-41792954)
chr7 (13-242)||(38000209-38000437)
chr7 (15-242)||(29330600-29330826)
chr7 (10-202)||(35583380-35583571)
chr7 (13-161)||(38256076-38256223)
chr7 (13-161)||(38263651-38263798)
chr7 (127-202)||(33851690-33851765)
chr7 (1-57)||(45491085-45491141)
chr7 (152-192)||(1905515-1905555)
[»] chr3 (17 HSPs)
chr3 (13-242)||(44206031-44206260)
chr3 (17-242)||(48064927-48065152)
chr3 (13-202)||(16478666-16478854)
chr3 (13-242)||(49325637-49325865)
chr3 (13-242)||(21448981-21449212)
chr3 (13-242)||(41972951-41973179)
chr3 (14-202)||(8484749-8484936)
chr3 (13-242)||(3939770-3939998)
chr3 (13-202)||(47373090-47373279)
chr3 (20-196)||(22162830-22163005)
chr3 (20-201)||(21978216-21978396)
chr3 (20-201)||(22000647-22000827)
chr3 (20-196)||(18877649-18877824)
chr3 (83-201)||(9332135-9332252)
chr3 (16-57)||(30389912-30389953)
chr3 (112-190)||(12719148-12719225)
chr3 (152-192)||(25213157-25213197)
[»] chr4 (13 HSPs)
chr4 (13-245)||(13722077-13722309)
chr4 (13-242)||(40691299-40691529)
chr4 (13-242)||(55610014-55610242)
chr4 (20-242)||(45657848-45658069)
chr4 (13-242)||(38989023-38989251)
chr4 (1-242)||(52917809-52918040)
chr4 (1-202)||(53270884-53271083)
chr4 (14-119)||(40760770-40760875)
chr4 (20-120)||(4352684-4352784)
chr4 (174-242)||(40760876-40760944)
chr4 (13-47)||(53512490-53512524)
chr4 (93-184)||(34952983-34953073)
chr4 (13-47)||(47984821-47984855)
[»] chr2 (13 HSPs)
chr2 (13-245)||(5462704-5462935)
chr2 (13-242)||(15111671-15111899)
chr2 (23-201)||(5936160-5936337)
chr2 (23-201)||(34950120-34950296)
chr2 (18-190)||(18964963-18965134)
chr2 (18-196)||(16414549-16414726)
chr2 (83-196)||(31717140-31717252)
chr2 (34-164)||(41962518-41962647)
chr2 (98-190)||(33946462-33946553)
chr2 (18-196)||(16252090-16252264)
chr2 (93-164)||(18964201-18964271)
chr2 (131-181)||(37126392-37126442)
chr2 (92-164)||(21484405-21484476)
[»] chr1 (14 HSPs)
chr1 (13-242)||(18278099-18278329)
chr1 (13-194)||(10311017-10311198)
chr1 (14-201)||(5748176-5748363)
chr1 (17-242)||(7198360-7198584)
chr1 (13-198)||(39599838-39600023)
chr1 (13-242)||(4852943-4853171)
chr1 (15-242)||(10221568-10221793)
chr1 (20-201)||(7562938-7563118)
chr1 (13-122)||(12524043-12524152)
chr1 (20-191)||(17384230-17384400)
chr1 (13-111)||(29946636-29946734)
chr1 (83-201)||(50890631-50890748)
chr1 (131-196)||(30516777-30516842)
chr1 (13-49)||(14271331-14271367)
[»] chr6 (7 HSPs)
chr6 (13-200)||(29436540-29436727)
chr6 (13-197)||(13038539-13038722)
chr6 (13-124)||(34950520-34950631)
chr6 (13-128)||(18584250-18584365)
chr6 (78-184)||(17520529-17520634)
chr6 (109-181)||(19626937-19627008)
chr6 (84-164)||(3513863-3513942)
[»] chr8 (4 HSPs)
chr8 (13-242)||(24832328-24832556)
chr8 (20-103)||(42190904-42190987)
chr8 (82-164)||(38621004-38621085)
chr8 (83-164)||(11457716-11457796)
[»] scaffold0168 (1 HSPs)
scaffold0168 (20-242)||(17076-17288)
[»] scaffold0007 (1 HSPs)
scaffold0007 (18-143)||(250747-250871)
[»] scaffold0210 (1 HSPs)
scaffold0210 (112-190)||(6695-6772)
[»] scaffold0001 (1 HSPs)
scaffold0001 (59-164)||(426481-426585)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 24854225 - 24854466
Alignment:
Q  1 catatgatgctagggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttt 100  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24854225 catacgatgctggggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcggattttagaatccggatttattcagcattggattcttt 24854324  T
Q  101 tgtgtgtcccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24854325 tgtgtgtcccacattgcaccgacaattttttgtggtccacaacgcccacatacctctataaataggggtccctgttttcattacaagtaaactacatcag 24854424  T
Q  201 acnnnnnnnnntggaattccttggctttgatccgaacaccaa 242  Q
    ||         ||||||||| |||||||||||||||||||||    
T  24854425 acaaaaaaacatggaattccctggctttgatccgaacaccaa 24854466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 1709610 - 1709799
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  | |||||||||||||| ||||||||||||||||||||    
T  1709610 gggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcggattttagaatctgaatttattcagcatttgattcttttgtgtgtcccac 1709709  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagac 202  Q
    ||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||  |||||||||||||| |||||||||||||||    
T  1709710 attgcaccgacaattttttgtggtccacaacgctcacatatctctataaataggggtctttgttttcattacaattaaactacatcagac 1709799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 6431026 - 6431184
Alignment:
Q  81 tattcagcattggattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttca 180  Q
    |||||||||||||||| ||||||||  |||||||||||||||||||||| ||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  6431026 tattcagcattggatttttttgtgt--cccacattgcaccgacaatttt-tgtggtccataacgcccacatacctcaataaataggggtccctgttttca 6431122  T
Q  181 ttacaagtaaactacatcagacnnnnnnnnntggaattccttggctttgatccgaacaccaa 242  Q
    |||||| |||||||||||||||         ||||||||| ||||||||||| |||||||||    
T  6431123 ttacaattaaactacatcagacaaaaaaacatggaattccctggctttgatctgaacaccaa 6431184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 30 - 155
Target Start/End: Original strand, 5337057 - 5337179
Alignment:
Q  30 cttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattgcaccgacaatttt 129  Q
    |||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||  ||||||||||||||||||||||| |||    
T  5337057 cttgggactttgagtatggtgagggttggttcggattttagaatccggatttattcatcattggattcttt--tgtgtcccacattgcaccgacaa-ttt 5337153  T
Q  130 ttgtggtccacaacacccacatacct 155  Q
    |||||||||||||| |||||||||||    
T  5337154 ttgtggtccacaacgcccacatacct 5337179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 27950248 - 27950119
Alignment:
Q  71 aattcggatttattcagcattggattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtc 170  Q
    ||||||||||  ||||||||  ||||||||||||||  ||||| |||||||||||||| | |||||| ||||| |||| |||||||||||||||||||||    
T  27950248 aattcggattgcttcagcataagattcttttgtgtgatccacaatgcaccgacaatttat-gtggtctacaacgcccaaatacctctataaataggggtc 27950150  T
Q  171 cctgttttcattacaagtaaactacatcaga 201  Q
    | |||||||||||||||||||||||| ||||    
T  27950149 catgttttcattacaagtaaactacaccaga 27950119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 41614752 - 41614864
Alignment:
Q  83 ttcagcattggattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcatt 182  Q
    ||||| |||||||||||||||||| |||||||| |||||||| |||||  |||||||||||  ||| ||||||||||||| |||| ||||||||||||||    
T  41614752 ttcagtattggattcttttgtgtgacccacatttcaccgacagttttta-tggtccacaacggccagatacctctataaaaagggatccctgttttcatt 41614850  T
Q  183 acaagtaaactaca 196  Q
    |||| |||||||||    
T  41614851 acaattaaactaca 41614864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 5342537 - 5342588
Alignment:
Q  150 atacctctataaataggggtccctgttttcattacaagtaaactacatcaga 201  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5342537 atacctctataaataggggtccctgttttcattacaattaaactacatcaga 5342588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 27949512 - 27949443
Alignment:
Q  94 attcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaata 164  Q
    ||||||||||| |  |||||||||||||| ||||||| ||||||||||||| ||| | |||||||||||||    
T  27949512 attcttttgtgggaaccacattgcaccgataattttt-gtggtccacaacatccataaacctctataaata 27949443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 28336037 - 28335971
Alignment:
Q  126 ttttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaac 192  Q
    |||| |||||||||  || |||| ||||||||||||||||| |||||||||||||| || |||||||    
T  28336037 ttttatgtggtccaggacgcccagatacctctataaataggtgtccctgttttcataaccagtaaac 28335971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 31470560 - 31470655
Alignment:
Q  20 caaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacatt 115  Q
    |||||||| ||||  ||||||| ||||||| | ||||||||| ||||||| |||| |||||  || |  ||||||||||||||  |||||||||||    
T  31470560 caaagggatactttggactttgtgtatggtgatggttggttcagattttaaaatttggattgcttaacaattggattcttttgcatgtcccacatt 31470655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 15812120 - 15812191
Alignment:
Q  109 ccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcat 181  Q
    |||||||||||||||| ||| | ||| | ||  |||||||  |||||||||||||||| ||||||||||||||    
T  15812120 ccacattgcaccgacagtttat-gtgctacaagacacccaagtacctctataaataggtgtccctgttttcat 15812191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 15030913 - 15031154
Alignment:
Q  1 catatgatgctagggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttt 100  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15030913 catatgatgttggggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcggattttagaattcggatttattcagcattggattcttt 15031012  T
Q  101 tgtgtgtcccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15031013 tgtgtgtcccacattgcaccgacaattttttgtggtccacaacgcccacatacctctataaataggggtccctattttcattacaagtaaactacatcag 15031112  T
Q  201 acnnnnnnnnntggaattccttggctttgatccgaacaccaa 242  Q
    ||         ||||||||| ||||||||||| |||||||||    
T  15031113 acaaaaaaacatggaattccctggctttgatctgaacaccaa 15031154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 7253593 - 7253781
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||    
T  7253593 gggtgaacaaagggaaacttgggactttgagtatggtgagggttggttcggattttagaatccggatttaatcagcatttgattcttttgtgtgtcccac 7253692  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagac 202  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7253693 attgcaccgacaa-tttttgtggtccacaacgcccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagac 7253781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 26793604 - 26793415
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  26793604 gggtgaacaaagggaaacttgagactttgagtatcgtgagggttggttcggattttagaatccagatttatttagcattggattcttttgtgtgtcccac 26793505  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagac 202  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26793504 attgcaccgacaattttttgtggtccacaacgcccacacacctctataaataggggtccttgttttcattacaagtaaactacatcagac 26793415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 110500 - 110272
Alignment:
Q  14 ggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccaca 113  Q
    |||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  110500 ggtgaacaaagggaaacttgggactttgagtatggagagggttggttcggattttagaatctggatttattcagcattggattcttttgtgtgtcccaca 110401  T
Q  114 ttgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagac-nnnnnnnnnt 212  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||          |    
T  110400 ttgcaccgacaat-ttttgtggtccacaacgcccacatacctctataaataggggtccctgttttcattataagtaaactagatcagacaaaaaaaaaat 110302  T
Q  213 ggaattccttggctttgatccgaacaccaa 242  Q
    |||||||| |||||||||||||||||||||    
T  110301 ggaattccctggctttgatccgaacaccaa 110272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 41792954 - 41792766
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  41792954 gggtgaacaaagggaaacttgggactttgagtatggtgagggttggttcggattttagaatccagatttattcagcattggattcttttgtgtgtcccac 41792855  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagac 202  Q
    |||||||| | || ||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41792854 attgcaccaataa-tttttgtggtccacaaggcccacatacctctataaataggggtccatgttttcattacaagtaaactacatcagac 41792766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 38000437 - 38000209
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||||||||||| |||||||||| |||| |||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  38000437 gggtgaacaaagggaaacttgggactttgagtgtggtgagggttggtttggattttagaatctggatttattcagcattggattcttttgtgtgtcccac 38000338  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacnnnnnnnnnt 212  Q
    ||||||||| ||| ||||||||||||| |||  |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||         |    
T  38000337 attgcaccggcaa-tttttgtggtccataacgtccacatacctctataaataggggtacctgttttcattactagtaaactacatcagacaaaaaaatat 38000239  T
Q  213 ggaattccttggctttgatccgaacaccaa 242  Q
    |||||||| ||||||||||| |||||||||    
T  38000238 ggaattccctggctttgatctgaacaccaa 38000209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 29330600 - 29330826
Alignment:
Q  15 gtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacat 114  Q
    ||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||    
T  29330600 gtgaacaaagggaaacttgggactttgagtatggtgagggttcgttcggattttagaatctggatttattcagcatttgattcttttgtgtgtcccacat 29330699  T
Q  115 tgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacnnnnnnnnntgg 214  Q
    |||||| |||| ||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||         |||    
T  29330700 tgcaccaacaa-tttttgtggtccacaacgctcacatacctctataaataggggttcctgttttcattacaattaaactacatcagacaaaaaaacatgg 29330798  T
Q  215 aattccttggctttgatccgaacaccaa 242  Q
    |||||  | |||||||||||||||||||    
T  29330799 aattctctagctttgatccgaacaccaa 29330826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 35583380 - 35583571
Alignment:
Q  10 ctagggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcc 109  Q
    ||||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||||||||||  | ||||||||||||||||||| |||| |||||||    
T  35583380 ctagggtgaacaacgggaaacttgggactttgagtatggtgagggttggttaggattttagaataagaatttattcagcattggatttttttttgtgtcc 35583479  T
Q  110 cacattgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagac 202  Q
    || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||    
T  35583480 catattgcaccgacaa-tttttgtggtccacaacacccacatacctctataaataggggtccctgatttcattataattaaactacatcagac 35583571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 38256076 - 38256223
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||    
T  38256076 gggtgaacaaagggaaaattgaaactttgagtatggtgagggttggttcggattttagaatccgaatttattcagcattggattcttttgtgcgtcccac 38256175  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataa 161  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  38256176 attgcaccgacaa-tttttgtggtccacaacgcccacatacctctataa 38256223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 38263651 - 38263798
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||    
T  38263651 gggtgaacaaagggaaaattgaaactttgagtatggtgagggttggttcggattttagaatccgaatttattcagcattggattcttttgtgcgtcccac 38263750  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataa 161  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  38263751 attgcaccgacaa-tttttgtggtccacaacgcccacatacctctataa 38263798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 33851765 - 33851690
Alignment:
Q  127 tttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagac 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  33851765 tttttgtggtccacaacacccacatacctctataaataggggtccttgttttcattacaattaaactacatcagac 33851690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 45491141 - 45491085
Alignment:
Q  1 catatgatgctagggtgaacaaagggaaacttgagactttgagtatggtaagggttg 57  Q
    |||| |||| ||||||||| |||||||||||||||| |||||||||||| |||||||    
T  45491141 catacgatgttagggtgaagaaagggaaacttgagaatttgagtatggtgagggttg 45491085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 1905515 - 1905555
Alignment:
Q  152 acctctataaataggggtccctgttttcattacaagtaaac 192  Q
    ||||||||||||||| |||||||||||||| || |||||||    
T  1905515 acctctataaataggtgtccctgttttcatcaccagtaaac 1905555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 44206031 - 44206260
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44206031 gggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 44206130  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacnnnnnnnnnt 212  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |    
T  44206131 attgcaccgacaattttttgtggtccacaacgcccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacaaaaaaacat 44206230  T
Q  213 ggaattccttggctttgatccgaacaccaa 242  Q
    |||||||| ||||||||||| |||||||||    
T  44206231 ggaattccctggctttgatcagaacaccaa 44206260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 48065152 - 48064927
Alignment:
Q  17 gaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattg 116  Q
    |||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| |||||||    
T  48065152 gaaccaagggaaacttgagactttgagtatggtgagggttggtttggattttagaatccagatttattcagcattggattcttttgtgtgtctcacattg 48065053  T
Q  117 caccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacnnnnnnnnntggaa 216  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||         |||||    
T  48065052 caccgacaattttttgtggtccacaacgcccacatacctctataaatagggggccctgttttcattacaagtaaactacatcagacaaaaaaacatggaa 48064953  T
Q  217 ttccttggctttgatccgaacaccaa 242  Q
    |||| | |||||||||||||||||||    
T  48064952 ttccctagctttgatccgaacaccaa 48064927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 16478854 - 16478666
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||  |||||||| |||||||||||||||||||||||||    
T  16478854 gggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcggattttagaatccgactttattcaacattggattcttttgtgtgtcccac 16478755  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagac 202  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16478754 attgcaccgacaat-ttttgtggtccacaacgcccacatacctctataaataggggtccctgttttcattacaattaaactacatcagac 16478666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 49325637 - 49325865
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| ||||||||| |||||||||||||||    
T  49325637 gggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcggattttagaatccgtatttattcaacattggattattttgtgtgtcccac 49325736  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacnnnnnnnnnt 212  Q
    | ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||         |    
T  49325737 a-tgcaccgacaattttttgtggtctacaacgcccacatacctctataaattggggtccttgttttcattacaagtaaactacatcagacaaaaaagcgt 49325835  T
Q  213 ggaattccttggctttgatccgaacaccaa 242  Q
    | |||||| |||||||||||||||||||||    
T  49325836 gaaattccctggctttgatccgaacaccaa 49325865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 21448981 - 21449212
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||    
T  21448981 gggtgaacaaagggaaacttgagactttgagtatggtgaaggttggttcggatttaagaatccagatttattcagcattggattcttttgtgtgtcccac 21449080  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatac--ctctataaataggggtccctgttttcattacaagtaaactacatcagacnnnnnnnn 210  Q
    ||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||| ||||||||||||| ||||||||||||||            
T  21449081 attgcaccgacaattttttgtggtccacaacgcccacatacctctctataaataggggtccctattttcattacaagcaaactacatcagacaaaaaaac 21449180  T
Q  211 ntggaattccttggctttgatccgaacaccaa 242  Q
      |||||||| ||||||||||| |||||||||    
T  21449181 aaggaattccctggctttgatctgaacaccaa 21449212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 41972951 - 41973179
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||||||||||| |||||||| | |||||||||||||||||| |||||||||||||||||    
T  41972951 gggtgaacaaatggaaacttgggactttgagtatggtgagggttggttcggagtttagaatccagatttattcagcattggaatcttttgtgtgtcccac 41973050  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacnnnnnnnnnt 212  Q
    ||||||||||||| ||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||         |    
T  41973051 attgcaccgacaa-tttttgtggtccacatcgcccacatacctctataaataagggtccctgttttcattacaattaaactacatcagacaaaaaaacat 41973149  T
Q  213 ggaattccttggctttgatccgaacaccaa 242  Q
    |||||||| |||||||||||||||||||||    
T  41973150 ggaattccctggctttgatccgaacaccaa 41973179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 8484749 - 8484936
Alignment:
Q  14 ggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccaca 113  Q
    |||||||||||||||||||  ||||||||||||||| |||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8484749 ggtgaacaaagggaaacttaggactttgagtatggtgagggtttgtttggattttagaatccggatttattcagcattggattcttttgtgtgtcccaca 8484848  T
Q  114 ttgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagac 202  Q
    |||||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8484849 ttgcaccgacaa-tttttatggtccacaacgcccatatacctctataaataggggtccctgttttcattacaagtaaactacatcagac 8484936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 3939770 - 3939998
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    |||||||||| |||||||||| ||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  3939770 gggtgaacaacgggaaacttgggactttgagtatggtgagggttggtttggattttagaatccggatttattcagcattggattcttttgtgtgtctcac 3939869  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacnnnnnnnnnt 212  Q
    |||||||||| || ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| |||| ||||||||||         |    
T  3939870 attgcaccgataa-tttttgtggtccacaacgcccacatatctctataaatatgggtccctgttttcattacaattaaattacatcagacaaaaaaacat 3939968  T
Q  213 ggaattccttggctttgatccgaacaccaa 242  Q
    |||||||| |||||||||||||||||||||    
T  3939969 ggaattccctggctttgatccgaacaccaa 3939998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 47373090 - 47373279
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    |||||||||| |||||||||| ||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47373090 gggtgaacaacgggaaacttgggactttgagtatggtgagggttggtttggattttagaatccggatttattcagcattggattcttttgtgtgtcccac 47373189  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaata-ggggtccctgttttcattacaagtaaactacatcagac 202  Q
    ||||||| || || ||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  47373190 attgcactgataa-tttttgtggtccacaatgcccacatacctctataaatagggggtccctgttttcattacaattaaactacatcagac 47373279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 22162830 - 22163005
Alignment:
Q  20 caaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattgcac 119  Q
    |||| ||||||||| ||||||| ||||||| ||||||||||| |||||||||||  |||||  ||||||||||||||||| |||||| ||||||||||||    
T  22162830 caaaaggaaacttgggactttgtgtatggtgagggttggttcagattttagaatctggattgcttcagcattggattcttctgtgtggcccacattgcac 22162929  T
Q  120 cgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactaca 196  Q
    | |||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  22162930 ccacaa-tttttgtggtccacaacgcccaaatacctctataaataggggtccctgttttcattacaagtaaagtaca 22163005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 21978216 - 21978396
Alignment:
Q  20 caaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattgcac 119  Q
    |||| ||||||||| ||||||| ||||||| |||||||||||||||||||||||| |||||  || |||||| ||||||| |||||  ||||||||||||    
T  21978216 caaaaggaaacttgggactttgtgtatggtgagggttggttcggattttagaatttggattgctttagcattagattcttctgtgtagcccacattgcac 21978315  T
Q  120 cgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcaga 201  Q
    | |||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  21978316 ccacaa-tttttgtggtccacaacgcccaaatacctctataaataggggtccctgttttcattacaagtaaagtacaccaga 21978396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 22000647 - 22000827
Alignment:
Q  20 caaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattgcac 119  Q
    |||| ||||||||| ||||||| ||||||| |||||||||||||||||||||||| |||||  || |||||| ||||||| |||||  ||||||||||||    
T  22000647 caaaaggaaacttgggactttgtgtatggtgagggttggttcggattttagaatttggattgctttagcattagattcttctgtgtagcccacattgcac 22000746  T
Q  120 cgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcaga 201  Q
    | |||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  22000747 ccacaa-tttttgtggtccacaacgcccaaatacctctataaataggggtccctgttttcattacaagtaaagtacaccaga 22000827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 18877824 - 18877649
Alignment:
Q  20 caaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattgcac 119  Q
    |||| ||||||||| | ||||| ||||| | ||||||| |||||||||||||||  | ||   |||| |||||||||||| ||  || ||||||||||||    
T  18877824 caaaaggaaacttgggtctttgtgtatgatgagggttgtttcggattttagaatctgaatggcttcaacattggattcttctggatggcccacattgcac 18877725  T
Q  120 cgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactaca 196  Q
    ||||||||||| ||| |||||||| |||| || ||||||||||||||||||||| ||||||||||||||||| ||||    
T  18877724 cgacaattttt-gtgctccacaacgcccaaatgcctctataaataggggtccctattttcattacaagtaaagtaca 18877649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 9332252 - 9332135
Alignment:
Q  83 ttcagcattggattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcatt 182  Q
    ||||||||||||||||||||||||   |||| |||||||||||||| | |||||||| ||| | || |||  ||| ||||||||| ||||| ||||||||    
T  9332252 ttcagcattggattcttttgtgtgattcacaatgcaccgacaatttat-gtggtccataacgcgcagataaatctgtaaatagggatccctattttcatt 9332154  T
Q  183 acaagtaaactacatcaga 201  Q
    |||||||||||||| ||||    
T  9332153 acaagtaaactacaccaga 9332135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 30389953 - 30389912
Alignment:
Q  16 tgaacaaagggaaacttgagactttgagtatggtaagggttg 57  Q
    |||||||| ||||||||||||||||||||||||| |||||||    
T  30389953 tgaacaaatggaaacttgagactttgagtatggtgagggttg 30389912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 12719225 - 12719148
Alignment:
Q  112 cattgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaa 190  Q
    ||||||||||||| ||||| ||||||||  ||||  | | ||||||||||||||| |||||||||||||| || |||||    
T  12719225 cattgcaccgacagttttt-gtggtccaggacacgtagagacctctataaataggtgtccctgttttcataaccagtaa 12719148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 25213157 - 25213197
Alignment:
Q  152 acctctataaataggggtccctgttttcattacaagtaaac 192  Q
    ||||||||||||||| |||||||||||||| || |||||||    
T  25213157 acctctataaataggtgtccctgttttcataaccagtaaac 25213197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 13722309 - 13722077
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  13722309 gggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcggattttagaatccagatttattcagcattggattcttttgtgtgtcccac 13722210  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacnnnnnnnnnt 212  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |    
T  13722209 attgcaccaacaattttttgtggtccacaacgcccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacaaaaaaacat 13722110  T
Q  213 ggaattccttggctttgatccgaacaccaaact 245  Q
    |||||||| || |||||||||||||||||||||    
T  13722109 ggaattccctgactttgatccgaacaccaaact 13722077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 40691299 - 40691529
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  40691299 gggtgaacaaagggaaacttgagactttgagtattgtgagggttggttcggattttagaatccggatttattcaacattggattcttttttgtgtcccac 40691398  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagac-nnnnnnnnn 211  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||              
T  40691399 attgcaccgacaattttttgtggtccacaacgcccacatacctctataaataggggtctctgttttcattacaagtaaactacatcagacaaaaaaaaca 40691498  T
Q  212 tggaattccttggctttgatccgaacaccaa 242  Q
    |||||||||||||||||||||||||||||||    
T  40691499 tggaattccttggctttgatccgaacaccaa 40691529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 55610014 - 55610242
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||  |||||||| |||||||||||||||||||||||||    
T  55610014 gggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcggattttagaatccgactttattcaacattggattcttttgtgtgtcccac 55610113  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacnnnnnnnnnt 212  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||         |    
T  55610114 attgcaccgacaa-tttttgtggtccacaacgcccacatacctctataaataggggtccctgttttcattacaattaaactacatcagacaaaaaaacat 55610212  T
Q  213 ggaattccttggctttgatccgaacaccaa 242  Q
    |||||||| || ||||||||||||||||||    
T  55610213 ggaattccctgtctttgatccgaacaccaa 55610242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 45657848 - 45658069
Alignment:
Q  20 caaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattgcac 119  Q
    |||||||||||||||||||||| ||||||| ||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45657848 caaagggaaacttgagactttgtgtatggtgaggattggttcgaattttagaatccggatttattcagcattggattcttttgtgtgtcccacattgcac 45657947  T
Q  120 cgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacnnnnnnnnntggaattc 219  Q
    |||||| |||||||| ||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||         ||||||||    
T  45657948 cgacaa-tttttgtgatccacaacacccagatacctctataaatagtggtccctgtgttcattacaagtaaactacatcagacaaaaaaacatggaattc 45658046  T
Q  220 cttggctttgatccgaacaccaa 242  Q
    | |||||||||||||||||||||    
T  45658047 cctggctttgatccgaacaccaa 45658069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 38989023 - 38989251
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    |||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| |||| ||| |||||||||||| ||||| ||||||||||||||    
T  38989023 gggtgagcaaagggaaacttgaaactttgagtatggtgagggttggttcggattttaaaatttggacttattcagcattcgattcatttgtgtgtcccac 38989122  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacnnnnnnnnnt 212  Q
    ||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||         |    
T  38989123 atttcaccgacaa-tttttgtggtccacaacgcccacatacctctataaataggggtccctattttcattgcaagtaaactacatcagacaaaaaaacat 38989221  T
Q  213 ggaattccttggctttgatccgaacaccaa 242  Q
    |||||||| |||||||||||||||||||||    
T  38989222 ggaattccctggctttgatccgaacaccaa 38989251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 52917809 - 52918040
Alignment:
Q  1 catatgatgctagggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttt 100  Q
    |||| ||| ||||||| |||||||||||||||  ||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||||||    
T  52917809 catacgatactagggtaaacaaagggaaacttaggactttgagcatggtgagggttggttcggattttagaatccgaatttattcagcattggattcttt 52917908  T
Q  101 tgtgtgtcccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcag 200  Q
    ||||||||| |||||||||||||||  ||||||||||||||||        |||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  52917909 tgtgtgtcctacattgcaccgacaa-cttttgtggtccacaac--------acctctataaat-ggggtccttgttttcattacaagtaaactacatcag 52917998  T
Q  201 acnnnnnnnnntggaattccttggctttgatccgaacaccaa 242  Q
    ||         ||||||||| |||||||||| ||||||||||    
T  52917999 acaaaaaaacatggaattccctggctttgattcgaacaccaa 52918040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 53271083 - 53270884
Alignment:
Q  1 catatgatgctagggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttt 100  Q
    |||||||| || ||||| |  |||||||||||| ||||||| ||||| | ||||||||||||||||||| ||| | || ||||||| |||||||||||||    
T  53271083 catatgatactggggtgtaacaagggaaacttgggactttgtgtatgatgagggttggttcggattttaaaatccagaattattcaacattggattcttt 53270984  T
Q  101 tgtgtgtcccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcag 200  Q
    ||||||||||||||||| ||||||| ||||||||||||||||   ||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  53270983 tgtgtgtcccacattgc-ccgacaa-tttttgtggtccacaatgaccagataactctataaataggggtccctgttttcattacaagtaaactacaccag 53270886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 40760770 - 40760875
Alignment:
Q  14 ggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccaca 113  Q
    ||||||||||||||| |||| || |||||||||||| | ||||||||| ||||||||||| || |||||||||||||||||||||||||||||| |||||    
T  40760770 ggtgaacaaagggaatcttgggaatttgagtatggtgaaggttggttcagattttagaatccgaatttattcagcattggattcttttgtgtgttccaca 40760869  T
Q  114 ttgcac 119  Q
    ||||||    
T  40760870 ttgcac 40760875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 4352784 - 4352684
Alignment:
Q  20 caaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattgcac 119  Q
    |||||||||| ||| |||| || ||| |||   ||||||||||||||||||||| |||||||||||| |||||||||||||| | |||||||||||||||    
T  4352784 caaagggaaaattgggactgtgtgtacggtgttggttggttcggattttagaatccggatttattcaacattggattcttttatatgtcccacattgcac 4352685  T
Q  120 c 120  Q
    |    
T  4352684 c 4352684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 40760876 - 40760944
Alignment:
Q  174 gttttcattacaagtaaactacatcagacnnnnnnnnntggaattccttggctttgatccgaacaccaa 242  Q
    |||||||||||||||||||||||||||||         ||||||||| |||||||||||||||||||||    
T  40760876 gttttcattacaagtaaactacatcagacaaaacaacatggaattccctggctttgatccgaacaccaa 40760944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 53512524 - 53512490
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatg 47  Q
    |||||||||||||||||||||||||||||||||||    
T  53512524 gggtgaacaaagggaaacttgagactttgagtatg 53512490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 184
Target Start/End: Original strand, 34952983 - 34953073
Alignment:
Q  93 gattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattac 184  Q
    ||||||||||| ||  |||||||||||||| ||||| | ||||||||||||  ||| |||| |||||||||| | ||  |||||||||||||    
T  34952983 gattcttttgtatggtccacattgcaccgataatttat-gtggtccacaacgtccagatacttctataaataagtgtttctgttttcattac 34953073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 47984821 - 47984855
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatg 47  Q
    |||||||||||||||||||||||| ||||||||||    
T  47984821 gggtgaacaaagggaaacttgagaatttgagtatg 47984855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 5462704 - 5462935
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  5462704 gggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcagattttagaatccggatttaatcagcattggattcttttgtgtgtcccac 5462803  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacnnnnnnnnnt 212  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |    
T  5462804 attgcaccgacaa-tttttgtggtccacaacgcccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacaaaaaaacat 5462902  T
Q  213 ggaattccttggctttgatccgaacaccaaact 245  Q
    ||||||||||||||||||||| |||||||||||    
T  5462903 ggaattccttggctttgatccaaacaccaaact 5462935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 15111671 - 15111899
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15111671 gggtgaacaaagggaaacttgggactttgtgtatggtgagggttggttcagattttagaattcggatttattcagcattggattcttttgtgtatcccac 15111770  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacnnnnnnnnnt 212  Q
    ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||         |    
T  15111771 attgcaccgacaa-tttttgtggtccacaacgcccagatacctctataaataggggtccctgttttcattacaagtaaactacattagacaaaaaatcat 15111869  T
Q  213 ggaattccttggctttgatccgaacaccaa 242  Q
    ||||||||  ||||||||||||||||||||    
T  15111870 ggaattcccaggctttgatccgaacaccaa 15111899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 5936160 - 5936337
Alignment:
Q  23 agggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattgcaccga 122  Q
    ||||||||||  ||||||| |||| || ||||||||||||||||||||||| ||||||  || |||||||||||||||||||||||| ||||||||||||    
T  5936160 agggaaacttcggactttgtgtattgtgagggttggttcggattttagaatccggattgctttagcattggattcttttgtgtgtcctacattgcaccga 5936259  T
Q  123 caattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcaga 201  Q
    ||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5936260 caa-tttttgtggtccataacgcccatatacctctataaataggggtccctgttttcattacaagtaaactacaccaga 5936337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 34950296 - 34950120
Alignment:
Q  23 agggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattgcaccga 122  Q
    ||||||||||| ||||||| |||| || ||||||||||||||||||||||| | ||||  ||||||||||||||||||||||||||||||||||||||||    
T  34950296 agggaaacttgggactttgtgtatcgtgagggttggttcggattttagaatccagattgcttcagcattggattcttttgtgtgtcccacattgcaccga 34950197  T
Q  123 caattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcaga 201  Q
    |||| |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| ||||||||||||| ||||    
T  34950196 caat-ttttgtggtccacaacgcccacatacgtctataaatcggggtccctgttttcatt-caagtaaactacaccaga 34950120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 18965134 - 18964963
Alignment:
Q  18 aacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattgc 117  Q
    |||||||| |||||||| |||||  ||| ||| ||||||||||||||||||| |||  |||    ||||||||||| |||||||||||  ||||||||||    
T  18965134 aacaaaggaaaacttgacactttttgtagggtgagggttggttcggattttataatctggaaagcttcagcattgggttcttttgtgttgcccacattgc 18965035  T
Q  118 accgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaa 190  Q
    || |||| ||| | |||||||||||| |||| ||| |||||||||||||| ||||||||||||||||||||||    
T  18965034 actgacagtttat-gtggtccacaacgcccagataactctataaatagggatccctgttttcattacaagtaa 18964963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 16414726 - 16414549
Alignment:
Q  18 aacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattgc 117  Q
    |||||||| ||||||| ||||||  ||| ||| ||||||||||||||||||| ||| ||||    |||| |||| ||||||| ||||||  |||||||||    
T  16414726 aacaaaggaaaacttgggactttttgtagggtgagggttggttcggattttataatacggaaagcttcaacattagattcttatgtgtgatccacattgc 16414627  T
Q  118 accgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactaca 196  Q
    ||||||||||| | |||||||||||| || | ||| ||||||||||||||  |||| |||||||| |||||||||||||    
T  16414626 accgacaatttat-gtggtccacaacgcctagataactctataaatagggagccctattttcatttcaagtaaactaca 16414549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 31717140 - 31717252
Alignment:
Q  83 ttcagcattggattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcatt 182  Q
    |||| |||||||||||||||||||  |||||||||||||||| ||| | ||||||||||||  ||| ||| |||||||||||||| ||||| ||||||||    
T  31717140 ttcatcattggattcttttgtgtgatccacattgcaccgacagtttat-gtggtccacaacgtccatataactctataaatagggatccctattttcatt 31717238  T
Q  183 acaagtaaactaca 196  Q
    ||||||||||||||    
T  31717239 acaagtaaactaca 31717252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 164
Target Start/End: Complemental strand, 41962647 - 41962518
Alignment:
Q  34 agactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattgcaccgacaattttttgt 133  Q
    |||||||||||||||| |  ||||||||||||||||||||  |||||||||||||||||||||||||||| ||  |||||||||| |||  | ||| |||    
T  41962647 agactttgagtatggtgaaagttggttcggattttagaatctggatttattcagcattggattcttttgtatggaccacattgca-cgaggagtttatgt 41962549  T
Q  134 ggtccacaacacccacatacctctataaata 164  Q
    ||||||||||| |||   |||||||||||||    
T  41962548 ggtccacaacatccaaggacctctataaata 41962518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 190
Target Start/End: Complemental strand, 33946553 - 33946462
Alignment:
Q  98 ttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaa 190  Q
    |||||||||  |||||||||||||||||||| | ||||||||  || |||| | ||||||||||||||| ||||| |||||||| || |||||    
T  33946553 ttttgtgtggtccacattgcaccgacaatttct-gtggtccaggacgcccagaaacctctataaataggtgtccccgttttcataaccagtaa 33946462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 16252090 - 16252264
Alignment:
Q  18 aacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattgc 117  Q
    |||||||| |||| |||||||||  ||| ||| ||||||||||||||||||| ||| ||||    |||| |||| ||||||| ||||||  || |||||     
T  16252090 aacaaaggaaaacatgagactttttgtagggtgagggttggttcggattttataatacggaaagcttcaacatt-gattcttatgtgtgatccccattga 16252188  T
Q  118 accgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactaca 196  Q
    |||||| | ||| | ||| ||||||| |||| ||| |||  |||||||||   |||||||||||| |||||||||||||    
T  16252189 accgac-agtttatatggcccacaacgcccagataactc--taaatagggagtcctgttttcatttcaagtaaactaca 16252264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 18964271 - 18964201
Alignment:
Q  93 gattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaata 164  Q
    |||||||||||| |  |||||||||||||||| ||||| || |||||||||| ||| | |||||||||||||    
T  18964271 gattcttttgtgaggtccacattgcaccgacagttttt-gttgtccacaacaaccataaacctctataaata 18964201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 37126392 - 37126442
Alignment:
Q  131 tgtggtccacaacacccacatacctctataaataggggtccctgttttcat 181  Q
    |||||||||  || |||| ||||||||||||||||| ||||||||||||||    
T  37126392 tgtggtccaggacgcccagatacctctataaataggtgtccctgttttcat 37126442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 21484405 - 21484476
Alignment:
Q  92 ggattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaata 164  Q
    |||||||||||| ||  ||||| |||||||||| |||| |||||||||||||  ||| | |||||||||||||    
T  21484405 ggattcttttgtatggaccacaatgcaccgaca-ttttatgtggtccacaacgtccagagacctctataaata 21484476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 18278329 - 18278099
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  18278329 gggtgaacaaaggaaaacttgagactttgagtatggtgagggttggttcggattttagaatccggatttattcagcattggattcttttgtgtatcccac 18278230  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcaga-cnnnnnnnnn 211  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |             
T  18278229 attgcaccgacaattttttgtggtccacaacgcccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagaccaaaaaaaaa 18278130  T
Q  212 tggaattccttggctttgatccgaacaccaa 242  Q
    ||||||||| |||||||||||||||||||||    
T  18278129 tggaattccctggctttgatccgaacaccaa 18278099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 10311017 - 10311198
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  10311017 gggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcggattttagaatccggatttattcagcattgtattcttttgtgtgtcccac 10311116  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaacta 194  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10311117 attgcaccgacaattttttgtggtccacaacgcccacatacctctataaataggggtccctgttttcattacaagtaaacta 10311198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 5748176 - 5748363
Alignment:
Q  14 ggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccaca 113  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5748176 ggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcgaattttagaatccggatttattcagcattggattcttttgtgtgtcccaca 5748275  T
Q  114 ttgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcaga 201  Q
    ||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5748276 ttgcaccaacaattttttgtggtccacaatgcccacatacctctataaataggggtccctattttcattacaagtaaactacatcaga 5748363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 7198360 - 7198584
Alignment:
Q  17 gaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattg 116  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  7198360 gaacaaagggaaacttgagactttgagtatggtgagtgttggttcggattttagaatccgaatttattcagcattggattcttttgtgtgtcccacattg 7198459  T
Q  117 caccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacnnnnnnnnntggaa 216  Q
    |||||| |||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||         |||||    
T  7198460 caccgataattttttgtggtcaacaacgcctacatacctctataattaggggtccctgttttcattacaagtaaactacatcagacgaaaaaacatggaa 7198559  T
Q  217 ttccttggctttgatccgaacaccaa 242  Q
    |||| |||||||||||||||||||||    
T  7198560 ttcc-tggctttgatccgaacaccaa 7198584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 39600023 - 39599838
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||| |||||||||||  |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39600023 gggtgaacagagggaaacttggaactttgagtatggtgagggttggttcggattttagaatccggatttattcagcattggattcttttgtgtgtcccac 39599924  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatc 198  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  39599923 attgcaccgacaattttttgtggtccacaacgcccacatacctctataaatatgggtcactgttttcattacaagtaaactacatc 39599838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 4853171 - 4852943
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    |||| |||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||| |||    
T  4853171 gggtaaacaaagggaaacttgggactttgagtatggtgagggttggttcggatttcagaatccggatttattcagcattgaattcttttgtgtgtcacac 4853072  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacnnnnnnnnnt 212  Q
    |||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||         |    
T  4853071 attgcaccgacaat-ttttgtggtccacaacgcccacatatctctataaataggggtccctgttttcattacaagtaaactacatcagacaaaaaaacat 4852973  T
Q  213 ggaattccttggctttgatccgaacaccaa 242  Q
    |||||||| ||||||||| |||||||||||    
T  4852972 ggaattccctggctttgacccgaacaccaa 4852943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 10221568 - 10221793
Alignment:
Q  15 gtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacat 114  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| || |||||||||| ||| ||||||||| ||||||||||||    
T  10221568 gtgaacaaagggaaacttgagactttgagtatggtgagggttggttcgaattttagaatccgaatttattcagtatttgattctttt-tgtgtcccacat 10221666  T
Q  115 tgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacnnnnnnnnntgg 214  Q
    |||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||         ||     
T  10221667 tgcaccgacaattttt-gtggttcacaacgcccacatacctctataaataggggtccctgttttcattacaattaaactacatcagacaaaaaaacatga 10221765  T
Q  215 aattccttggctttgatccgaacaccaa 242  Q
    |||||| |||||||||||||||||||||    
T  10221766 aattccctggctttgatccgaacaccaa 10221793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 7562938 - 7563118
Alignment:
Q  20 caaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattgcac 119  Q
    ||||||||||||| |||||||| ||||||| || |||||||||||||||||||| ||||||  |||| ||||| ||||||||||||| ||||||||||||    
T  7562938 caaagggaaacttaagactttgtgtatggtgagtgttggttcggattttagaatccggattgcttcaacattgaattcttttgtgtggcccacattgcac 7563037  T
Q  120 cgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcaga 201  Q
    |||||| |||| |  ||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  7563038 cgacaa-ttttagcagtccacaacgcccagatacctctataaataggggtccatgttttcattacaagtaaactacaccaga 7563118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 12524043 - 12524152
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  12524043 gggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcggattttagaatccggatttattcagcattggattcttttgtgtttcccac 12524142  T
Q  113 attgcaccga 122  Q
    ||||||||||    
T  12524143 attgcaccga 12524152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 17384230 - 17384400
Alignment:
Q  20 caaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattgcac 119  Q
    |||||||||||||   |||||| ||||||| |||||||||||||||||||||||  |||||  |||| |||||||||||||| ||||||||||||| |||    
T  17384230 caaagggaaactttgaactttgtgtatggtgagggttggttcggattttagaatctggattgcttcaacattggattcttttatgtgtcccacattccac 17384329  T
Q  120 cgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaa 191  Q
    |||||| ||||| || |||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  17384330 cgacaa-tttttatgatccataacacccacatacctctataaataggggtccttgttttcattacacgtaaa 17384400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 29946636 - 29946734
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtccca 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||    
T  29946636 gggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcggattttataatccgaatttattcagcattggattcttttgtgtgtccca 29946734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 50890748 - 50890631
Alignment:
Q  83 ttcagcattggattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcatt 182  Q
    |||| |||||||||||||||||||  |||||||||||||||| |||   |||||||||||| |||| ||| ||||||||||||||||| |||||||||||    
T  50890748 ttcaacattggattcttttgtgtgatccacattgcaccgacagtttaa-gtggtccacaacgcccaaataactctataaataggggtcactgttttcatt 50890650  T
Q  183 acaagtaaactacatcaga 201  Q
    |||||||||||||| ||||    
T  50890649 acaagtaaactacaccaga 50890631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 30516777 - 30516842
Alignment:
Q  131 tgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactaca 196  Q
    ||||||||||||| |||| ||| ||||||||||||||||||||||||| || ||||||||||||||    
T  30516777 tgtggtccacaacgcccaaataactctataaataggggtccctgttttaatcacaagtaaactaca 30516842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 14271367 - 14271331
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggt 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  14271367 gggtgaacaaagggaaacttgagactttgagtatggt 14271331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 29436727 - 29436540
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||    
T  29436727 gggtgaacaaagggaaacttgagactttgagtatggtgagggttggttcggattttagaatccgaatttattcaacattggattcttttgtgtgtcccac 29436628  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcag 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29436627 attgcaccgacaattttttgtggtccacaacgcccacatacctctataaataggggtccctgttttcattacaagtaaactacatcag 29436540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 13038722 - 13038539
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||  ||||||||||||||||| |||||||||||| ||||||    
T  13038722 gggtgaacaaagggaaacttgggactttgagtatggtgagggttggatcggattttagaatctggatttattcagcattgcattcttttgtgtttcccac 13038623  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacat 197  Q
    ||||||||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  13038622 attgcaccgacaa-tttatgtggtcaacaacgcccacatacctctataaataggggtccttgttttcattacaattaaactacat 13038539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 34950631 - 34950520
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  34950631 gggtgaacaaaggaaaacttgagactttgagtatggtgagggttggttcggattttagaatccggatttattcaacattggattcttttgtgtgtcccac 34950532  T
Q  113 attgcaccgaca 124  Q
    ||||||||||||    
T  34950531 attgcaccgaca 34950520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 18584365 - 18584250
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||    
T  18584365 gggtgaacaaagggaaacttgggactttgagtatggtgatggttggttcggattttagaatccggatttattcaacattggattcttttgtgtctcccac 18584266  T
Q  113 attgcaccgacaattt 128  Q
    ||||||||||||||||    
T  18584265 attgcaccgacaattt 18584250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 17520634 - 17520529
Alignment:
Q  78 atttattcagcattggattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttt 177  Q
    ||||| ||||||| |||||| ||| ||||  |||||||||||||||| ||| | ||||||||||||||| | ||||||||||||||| | || ||| |||    
T  17520634 atttactcagcataggattcctttttgtgatccacattgcaccgacagtttct-gtggtccacaacacctagatacctctataaataagtgttcctattt 17520536  T
Q  178 tcattac 184  Q
    |||||||    
T  17520535 tcattac 17520529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 19627008 - 19626937
Alignment:
Q  109 ccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcat 181  Q
    |||||||||||||||||||||| ||||||||  |  |||| ||||||||||||||||| |||| |||||||||    
T  19627008 ccacattgcaccgacaattttt-gtggtccatgatgcccagatacctctataaataggtgtccttgttttcat 19626937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 3513863 - 3513942
Alignment:
Q  84 tcagcattggattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaata 164  Q
    ||||||| ||||||||||||| |  ||||||| ||| ||||| |||||||||||||||||| ||| | ||| |||||||||    
T  3513863 tcagcataggattcttttgtgaggaccacatttcacagacaa-tttttgtggtccacaacatccataaacccctataaata 3513942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 24832556 - 24832328
Alignment:
Q  13 gggtgaacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccac 112  Q
    ||||||||||||||| ||||| ||||||||||||||| |||||| |||||||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  24832556 gggtgaacaaagggagacttgggactttgagtatggtgagggtttgttcggattttacaatctggatttattcagcattggattcttttgtgtgtcccac 24832457  T
Q  113 attgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacnnnnnnnnnt 212  Q
    ||||||||||||| ||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||         |    
T  24832456 attgcaccgacaa-ttcctgtggtccacaacgcccacatacctctataaataggggtccctgttttcattacaattaaactacattagacaaaacaacat 24832358  T
Q  213 ggaattccttggctttgatccgaacaccaa 242  Q
    |||||||| |||||||||||  ||||||||    
T  24832357 ggaattccctggctttgatctaaacaccaa 24832328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 42190987 - 42190904
Alignment:
Q  20 caaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgt 103  Q
    |||||||||||||| ||||||| ||||||| | ||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  42190987 caaagggaaacttgggactttgtgtatggtgatggttggttcggattttagaatccgaatttattcagcattggattcttttgt 42190904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 38621004 - 38621085
Alignment:
Q  82 attcagcattggattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaata 164  Q
    |||||||||  ||||||||||||||  ||||||||| |||| |||||| |||||||||||||| ||| || ||||||||||||    
T  38621004 attcagcatatgattcttttgtgtgatccacattgcgccgataatttt-tgtggtccacaacatccaaatgcctctataaata 38621085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 11457796 - 11457716
Alignment:
Q  83 ttcagcattggattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacacccacatacctctataaata 164  Q
    |||||||| |||||||||||| ||  ||||| ||||||||||| ||| |||||||||||||  ||| | |||||||||||||    
T  11457796 ttcagcataggattcttttgtatggaccacaatgcaccgacaa-tttatgtggtccacaacgtccagagacctctataaata 11457716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 17288 - 17076
Alignment:
Q  20 caaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattgcac 119  Q
    |||||||||||||| ||||||| ||||||| | ||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||    
T  17288 caaagggaaacttgggactttgtgtatggtgatggttggttcggattttagaatccggattcattcaacattggattcttttgtgtgtcccacattgcac 17189  T
Q  120 cgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaaactacatcagacnnnnnnnnntggaattc 219  Q
    | |||| ||||||||||         |||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||         |||||||     
T  17188 caacaa-tttttgtggt---------ccacatgcctctataaataggggtcgatgttttcattacaagtaaactacatcagacaaaaaaacatggaattt 17099  T
Q  220 cttggctttgatccgaacaccaa 242  Q
    |||||||||||||||||||||||    
T  17098 cttggctttgatccgaacaccaa 17076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 250871 - 250747
Alignment:
Q  18 aacaaagggaaacttgagactttgagtatggtaagggttggttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattgc 117  Q
    ||||||||||||||||  |||||  ||| ||| ||||||||||||||||||| ||| ||||    ||||| |||||||||||||||||| |||||||| |    
T  250871 aacaaagggaaacttggcactttctgtagggtgagggttggttcggattttataatccggaaaacttcaggattggattcttttgtgtggcccacattac 250772  T
Q  118 accgacaattttttgtggtccacaac 143  Q
    |||||||| ||| |||||||||||||    
T  250771 accgacaa-tttatgtggtccacaac 250747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 6695 - 6772
Alignment:
Q  112 cattgcaccgacaattttttgtggtccacaacacccacatacctctataaataggggtccctgttttcattacaagtaa 190  Q
    |||||||||||||||||| |||||||||  ||||||| | ||||||||||||||| | |||| ||||||| || |||||    
T  6695 cattgcaccgacaatttt-tgtggtccaagacacccagagacctctataaataggtgccccttttttcataaccagtaa 6772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 164
Target Start/End: Original strand, 426481 - 426585
Alignment:
Q  59 ttcggattttagaattcggatttattcagcattggattcttttgtgtgtcccacattgcaccgacaattttttgtggtccacaacacccacatacctcta 158  Q
    |||||||| || ||| || |||| || | |||||||||||||||| ||  |||||||||||| | | |||| |||||||||||||  ||| |||||||||    
T  426481 ttcggattatataatccgaatttctttatcattggattcttttgtatggtccacattgcaccaatagtttt-tgtggtccacaacgtccagatacctcta 426579  T
Q  159 taaata 164  Q
    ||||||    
T  426580 taaata 426585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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