View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7811_low_56 (Length: 249)

Name: NF7811_low_56
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7811_low_56
NF7811_low_56
[»] chr5 (13 HSPs)
chr5 (8-249)||(9003904-9004143)
chr5 (12-134)||(8535946-8536068)
chr5 (83-136)||(8637389-8637442)
chr5 (11-134)||(8529381-8529504)
chr5 (8-131)||(1599842-1599965)
chr5 (8-134)||(2874036-2874162)
chr5 (68-134)||(2904542-2904608)
chr5 (187-229)||(8644835-8644877)
chr5 (187-229)||(9074197-9074239)
chr5 (8-52)||(8641821-8641865)
chr5 (77-121)||(8678334-8678378)
chr5 (77-121)||(11354051-11354095)
chr5 (77-121)||(11373298-11373342)
[»] chr7 (3 HSPs)
chr7 (8-134)||(48361391-48361517)
chr7 (71-134)||(35780317-35780380)
chr7 (187-242)||(35780433-35780488)
[»] chr4 (1 HSPs)
chr4 (11-134)||(9443542-9443665)
[»] chr1 (1 HSPs)
chr1 (83-116)||(5131283-5131316)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 9003904 - 9004143
Alignment:
Q  8 tggtgttcccagtgtgtgtatctcaaggatcgcacgctcaaacacaaagttattgtcacctctaacatgtctcgtccatatttttatcaccttataatca 107  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9003904 tggtgttcccagtgt--gtatctcaaggatcgcacgctcaaacacaaagttattgtcacctctaacatgtctcgtccatatttttatcaccttataatca 9004001  T
Q  108 ttagttttaggttgataaccaaaaccaacatgctcttggtttattacccactttgtggataacctggtagaagtcatgttagctttaggaagtcttatga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  9004002 ttagttttaggttgataaccaaaaccaacatgctcttggtttattacccgctttgtggataacctggtagaagtcatggtagcgttaggaagtcttatga 9004101  T
Q  208 attccccagtgactgggttgcataccaccaaagggaagccat 249  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  9004102 attccccagtgactgggttgcataccactaaagggaagccat 9004143  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 8535946 - 8536068
Alignment:
Q  12 gttcccagtgtgtgtatctcaaggatcgcacgctcaaacacaaagttattgtcacctctaacatgtctcgtccatatttttatcaccttataatcattag 111  Q
    ||||| ||||||| |||||||||| ||  |||||||||| |  |   |||| ||| | |||||||||||  ||| || |||||||||||||| |||||||    
T  8535946 gttccaagtgtgtttatctcaagggtcaaacgctcaaactcccacacattggcacgtttaacatgtctcacccacatgtttatcaccttatattcattag 8536045  T
Q  112 ttttaggttgataaccaaaacca 134  Q
    ||||||||||  |||||||||||    
T  8536046 ttttaggttggaaaccaaaacca 8536068  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 8637389 - 8637442
Alignment:
Q  83 ccatatttttatcaccttataatcattagttttaggttgataaccaaaaccaac 136  Q
    ||||||| ||||||||||||| |||||||||||||||||  |||||||||||||    
T  8637389 ccatattcttatcaccttatattcattagttttaggttggaaaccaaaaccaac 8637442  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 8529381 - 8529504
Alignment:
Q  11 tgttcccagtgtgtgtatctcaaggatcgcacgctcaaacacaaagttattgtcacctctaacatgtctcgtccatatttttatcaccttataatcatta 110  Q
    |||||| ||||||| ||||||||||||| |||||||||||||  | | |||| ||  | ||||||||||  |||| |   |||| |||||||| ||||||    
T  8529381 tgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccacacgcttattaccttatattcatta 8529480  T
Q  111 gttttaggttgataaccaaaacca 134  Q
    |||||||||||  | |||||||||    
T  8529481 gttttaggttggaatccaaaacca 8529504  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 1599965 - 1599842
Alignment:
Q  8 tggtgttcccagtgtgtgtatctcaaggatcgcacgctcaaacacaaagttattgtcacctctaacatgtctcgtccatatttttatcaccttataatca 107  Q
    ||||||||| ||||||| ||||||||||||| ||  || |||| | ||   |||| ||| | |||||| ||||  ||  || |||||||||||||| |||    
T  1599965 tggtgttccaagtgtgtttatctcaaggatcacaatcttaaactccaacgcattggcacgtttaacatatctcaccctcatgtttatcaccttatattca 1599866  T
Q  108 ttagttttaggttgataaccaaaa 131  Q
    ||||||||||||||  ||||||||    
T  1599865 ttagttttaggttggaaaccaaaa 1599842  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 2874162 - 2874036
Alignment:
Q  8 tggtgttcccagtgtgtgtatctcaaggatcgcacgctcaaacacaaagttattgtcacctctaacatgtctcgtccatatttttatcaccttataatca 107  Q
    ||||||||| || ||||||||||| || |   ||||||||||||| ||   |||||| | |||||||| | |  |||||||| | ||||||||||| |||    
T  2874162 tggtgttccgagcgtgtgtatctcgagcactacacgctcaaacaccaaacgattgtctcgtctaacatatttgttccatattatgatcaccttatattca 2874063  T
Q  108 ttagttttaggttgataaccaaaacca 134  Q
    |||||||| |||||  ||| |||||||    
T  2874062 ttagttttgggttggaaactaaaacca 2874036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 2904608 - 2904542
Alignment:
Q  68 tctaacatgtctcgtccatatttttatcaccttataatcattagttttaggttgataaccaaaacca 134  Q
    |||||||||| |  |||| ||| ||||||||||||| ||||||||||| |||||  |||||||||||    
T  2904608 tctaacatgtttattccacattattatcaccttatattcattagttttgggttggaaaccaaaacca 2904542  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 8644835 - 8644877
Alignment:
Q  187 tagctttaggaagtcttatgaattccccagtgactgggttgca 229  Q
    ||||||||||||||||||| || |||||||||||||| |||||    
T  8644835 tagctttaggaagtcttataaactccccagtgactggattgca 8644877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 9074239 - 9074197
Alignment:
Q  187 tagctttaggaagtcttatgaattccccagtgactgggttgca 229  Q
    |||||| ||||||||||||||| ||||| ||||||||||||||    
T  9074239 tagcttcaggaagtcttatgaactcccctgtgactgggttgca 9074197  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 8641821 - 8641865
Alignment:
Q  8 tggtgttcccagtgtgtgtatctcaaggatcgcacgctcaaacac 52  Q
    ||||| ||| ||||||| ||||||||||||| |||||||||||||    
T  8641821 tggtgctccaagtgtgtttatctcaaggatcacacgctcaaacac 8641865  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 8678334 - 8678378
Alignment:
Q  77 tctcgtccatatttttatcaccttataatcattagttttaggttg 121  Q
    |||| |||||||| |||||||||| || |||||||||||||||||    
T  8678334 tctcctccatattcttatcaccttgtattcattagttttaggttg 8678378  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 11354095 - 11354051
Alignment:
Q  77 tctcgtccatatttttatcaccttataatcattagttttaggttg 121  Q
    |||| |||| ||| ||||||||||||| |||||||||||||||||    
T  11354095 tctcttccacattcttatcaccttatattcattagttttaggttg 11354051  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 11373298 - 11373342
Alignment:
Q  77 tctcgtccatatttttatcaccttataatcattagttttaggttg 121  Q
    |||| |||| ||| ||||||||||||| |||||||||||||||||    
T  11373298 tctcttccacattcttatcaccttatattcattagttttaggttg 11373342  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 48361517 - 48361391
Alignment:
Q  8 tggtgttcccagtgtgtgtatctcaaggatcgcacgctcaaacacaaagttattgtcacctctaacatgtctcgtccatatttttatcaccttataatca 107  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||| |  |   |||| ||| | |||||||||||  ||| || |||||||||||||| |||    
T  48361517 tggtgttccaagtgtgtttatctcaaggatcacacgctcaaactcccacgcattggcacgtttaacatgtctcacccacatgtttatcaccttatattca 48361418  T
Q  108 ttagttttaggttgataaccaaaacca 134  Q
    ||||||||||||||  |||||||||||    
T  48361417 ttagttttaggttggaaaccaaaacca 48361391  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 35780317 - 35780380
Alignment:
Q  71 aacatgtctcgtccatatttttatcaccttataatcattagttttaggttgataaccaaaacca 134  Q
    |||||||||  |||||||||||||||||||||| |||||||||||||||||  |||||||||||    
T  35780317 aacatgtcttatccatatttttatcaccttatattcattagttttaggttggaaaccaaaacca 35780380  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 35780433 - 35780488
Alignment:
Q  187 tagctttaggaagtcttatgaattccccagtgactgggttgcataccaccaaaggg 242  Q
    |||||| ||||||||||||||| ||||| |||||||||||||| | ||| ||||||    
T  35780433 tagcttcaggaagtcttatgaactcccccgtgactgggttgcaaatcactaaaggg 35780488  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 9443542 - 9443665
Alignment:
Q  11 tgttcccagtgtgtgtatctcaaggatcgcacgctcaaacacaaagttattgtcacctctaacatgtctcgtccatatttttatcaccttataatcatta 110  Q
    |||||| ||||||| ||||||||||||| |||||||||||||  | | |||| |   | ||||||||||  |||| |   |||| |||||||| ||||||    
T  9443542 tgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcttgtttaacatgtcttatccacacgcttattaccttatattcatta 9443641  T
Q  111 gttttaggttgataaccaaaacca 134  Q
    |||||||||||  | |||||||||    
T  9443642 gttttaggttggaatccaaaacca 9443665  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 5131283 - 5131316
Alignment:
Q  83 ccatatttttatcaccttataatcattagtttta 116  Q
    ||||||||||||||||||||| ||||||||||||    
T  5131283 ccatatttttatcaccttatattcattagtttta 5131316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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