View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7811_low_65 (Length: 206)
Name: NF7811_low_65
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 1500348 - 1500173
Alignment:
| Q |
12 |
ataatactagtaatcaacaagcgatgaacattaaaggagttgataggcaaagaaggttgagtttgagtgaaacgatcaaggtagacataagcaacaatga |
111 |
Q |
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| T |
1500348 |
ataacactagtaatcaacaagcgatgaacattgaaggagttgataggcaaagaaggttgagtttgagtgaaacgatcaaggtagacataagcaacaatga |
1500249 |
T |
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| Q |
112 |
agcatgaagaactacaatttgcatacttgaaaattctctcaagatagctttgaattgagatgtttggtcttgacaa |
187 |
Q |
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| T |
1500248 |
agcatgaagaactacaatttgcatacttgaaaattctctcaagatagctttgaattgagatgtttggtcttgacaa |
1500173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 33 - 172
Target Start/End: Original strand, 30934623 - 30934762
Alignment:
| Q |
33 |
cgatgaacattaaaggagttgataggcaaagaaggttgagtttgagtgaaacgatcaaggtagacataagcaacaatgaagcatgaagaactacaatttg |
132 |
Q |
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||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||||||| || || | ||||||||| | |
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| T |
30934623 |
cgatgaacattgaaggagttgataggcaaagagggttgtctttgagtgaaacgatcaagatagacatatgcaacaatgaaacaggatggactacaattgg |
30934722 |
T |
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| Q |
133 |
catacttgaaaattctctcaagatagctttgaattgagat |
172 |
Q |
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| T |
30934723 |
catacttgaaaattctctcaaggtagttctgaattgagat |
30934762 |
T |
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