View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7812_high_13 (Length: 260)
Name: NF7812_high_13
Description: NF7812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7812_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 32745882 - 32745631
Alignment:
| Q |
1 |
gattcatcttgtgtatcatatcgaagaaaataatgagcttttgtactacaaaagtggtgtcatgttgtatttggaggactcaatcagaacttggagctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32745882 |
gattcatcttgtgtatcatatcgaagaaaataatgagcttttgtactacaaaagtggtgtcatgttgtatttggaggactcaatcagaacttggagctaa |
32745783 |
T |
|
| Q |
101 |
agttggtgacgaactgaagaatggaataaatgtagctaagaatcttcaaatccaaccacttaacatcattgaaaatctcattattaaaagtttgtgaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32745782 |
agttggtgacgaactgaagaatggaataaatgtagctaagaatcttcaaatctaaccacttaacatcattgaaaatctcattattaaaagtttgtgaaat |
32745683 |
T |
|
| Q |
201 |
tctttcctttgtcgcgtgcccctctttttccgaaaattcccttgatattctt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32745682 |
tctttcctttgtcgcgtgcccctctttttccgaaaattcccttgattttctt |
32745631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University