View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7812_high_2 (Length: 569)
Name: NF7812_high_2
Description: NF7812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7812_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Original strand, 1196797 - 1197348
Alignment:
| Q |
1 |
ttatatttatctacacaatggactttgaggatgatgagaacaagcaagttgattttctaaagaacaataacccatcatctcttcaatgctaattgatcta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1196797 |
ttatatttatctacacaatggactttgaggatgatgagaacaagcaagttgattttctaaagaacaataacccatcatctcttcaatgctaattgatcta |
1196896 |
T |
|
| Q |
101 |
cattcttgatttgaaaacttgtccttattctttccatgatcttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaatcctcaatacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1196897 |
cattcttgatttgaaaacttgtccttattctttccatgatcttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaatcctcaatacac |
1196996 |
T |
|
| Q |
201 |
cagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagcttgatgacccaaatattcagttggtatgatgaacctcttaagctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1196997 |
cagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagcttgatgacccaaatattcagttggtatgatgaacctcttaagctc |
1197096 |
T |
|
| Q |
301 |
ttctccaacacaaacagctaaatacccttttggaacagaaccattgttgtttgatgatgttgttcctccttcacgttcagaaagagaaagtgttcttttt |
400 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1197097 |
ttctccaacacaaacagctaaatatccttttggaacagaaccattgttgtttgatgatgttgttcctccttcacgttcagaaagagaaagtgttcttttt |
1197196 |
T |
|
| Q |
401 |
agaaacttcatgcttttgcttctagtgatggtggtggtgttggctgtggtttttgatgagtttgctatttttctccatttcttaaggatctgttgaagtc |
500 |
Q |
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| T |
1197197 |
agaaacttcatgcttttgcttctagtgatggtggtggtgttggctgtggtttttgatgagtttgctatttttctccatttcttaaggatctgttgaagtc |
1197296 |
T |
|
| Q |
501 |
taacaatttctctaattttgttagatttcttttgatccattgacatggtgat |
552 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1197297 |
taacaatttctctaattttgttagatttcttttgatccattgacatggtgat |
1197348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Complemental strand, 7289783 - 7289234
Alignment:
| Q |
1 |
ttatatttatctacacaatggactttgaggatgatgagaacaagcaagttgattttctaaagaacaataacccatcatctcttcaatgctaattgatcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |||||| |||||||||| |||||||||| |
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| T |
7289783 |
ttatatttatctacacaatggactttgaggatgatgagaacaaacgagttaattttctaaagaacaataactcatcatttcttcaatgccaattgatcta |
7289684 |
T |
|
| Q |
101 |
cattcttgatttgaaaacttgtccttattctttccatgatcttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaatcctcaatacac |
200 |
Q |
| |
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|||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||| |
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| T |
7289683 |
cattcttg-tttgaacacta-tccttattctttccatgatcttcaaccatcttcaaaatacactcaaaagtagagacttcacaaagaatcctcaaaacac |
7289586 |
T |
|
| Q |
201 |
cagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagcttgatgacccaaatattcagt---tggtatgatgaacctcttaag |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
7289585 |
cagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagcttgatgacacaaatattcagttggtggtatgatgaacctcttaag |
7289486 |
T |
|
| Q |
298 |
ctcttctccaacacaaacagctaaatacccttttggaacagaaccattgttgtttgatgatgttgttcctccttcacgttcagaaagagaaagtgttctt |
397 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | ||| |||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
7289485 |
ttcttctccaatacaaacagctaaatacccttttaggacataaccattgttctttgatgatgttattcctccttcacgttcagatagagaaagtgttctt |
7289386 |
T |
|
| Q |
398 |
tttagaaacttcatgcttttgcttctagtgatggtggtggtgttggctgtggtttttgatgagtttgctatttttctccatttcttaaggatctgttgaa |
497 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||| ||||||||| | | ||| | || ||||| |||||||| | |||||| ||||||| ||||||| |
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| T |
7289385 |
tttagaaacttcatgattttgcttttattgatggtgttggtgttgg-tttaatttgt-ataagttttctattttttttcatttc-taaggatttgttgaa |
7289289 |
T |
|
| Q |
498 |
gtctaacaatttctctaattttgttagatttcttttgatccattgacatggtgat |
552 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7289288 |
gtctaacgatttctctaattttgttagatttcttttgatccattgacatggtgat |
7289234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 141 - 320
Target Start/End: Complemental strand, 50471318 - 50471139
Alignment:
| Q |
141 |
cttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaatcctcaatacaccagcttgttgaaacccaaattcttcttcagcttctctcaa |
240 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||| | |
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| T |
50471318 |
cttcaaccatcttcaagatactctcaaacactgaaacttcacaaggaattctcagaacaccagtttgttcaaacccaaattcttcttcagcttctctgag |
50471219 |
T |
|
| Q |
241 |
aagaatctgaaaagcttgatgacccaaatattcagttggtatgatgaacctcttaagctcttctccaacacaaacagcta |
320 |
Q |
| |
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| || ||||| ||||||||| ||||||| || |||||||| | ||||| ||||| ||| | ||||||||||| |||| |
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| T |
50471218 |
taatatatgaaaggcttgatgagccaaatactcggttggtataacaaacctgttaaggtctacaccaacacaaacggcta |
50471139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 471 - 532
Target Start/End: Complemental strand, 50470991 - 50470930
Alignment:
| Q |
471 |
ttctccatttcttaaggatctgttgaagtctaacaatttctctaattttgttagatttcttt |
532 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||| |
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| T |
50470991 |
ttctccatttcttaaggatctgttgaagtctaacgatttctctgattttgttaggtttcttt |
50470930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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