View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7812_high_8 (Length: 368)
Name: NF7812_high_8
Description: NF7812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7812_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 161 - 318
Target Start/End: Complemental strand, 28628961 - 28628804
Alignment:
| Q |
161 |
gtaagatgacggaagtttctgaagtgattcattagttggaaggaaatcatgtataacaaagccaataa-caatgtttcttttgggttgacttttgacctt |
259 |
Q |
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| T |
28628961 |
gtaagatgacggaagtttctgaagtgattcatcagttggaaggaaatcatgtataacaa-gccaataaacaatgtttcatttgagttgacttgtgacctt |
28628863 |
T |
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| Q |
260 |
gaagtgtgctactttcaaagtcttatgttcgattctcttttgttagtagactagtttgt |
318 |
Q |
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| T |
28628862 |
gaagtgtactacttttaaagtcttatgttcgattctctttagttagtagactagtttgt |
28628804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 28629173 - 28629045
Alignment:
| Q |
9 |
gagtgagatgaagaaaatgtcattagcatcc--gcctacttgagtttatttattttgaaatatctcctcattcctattcctccaaatttcccaacatgtc |
106 |
Q |
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| T |
28629173 |
gagtgaaatgaagaaaatgtcattagcatccccgcctacgtgagtttatttattttgaaatatctcctcattcctattcctccaaatttcccaacatgtc |
28629074 |
T |
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| Q |
107 |
actattaataaggatcatgtagctgcagt |
135 |
Q |
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| T |
28629073 |
actattaataaggatcatgtagctgcagt |
28629045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 29837229 - 29837179
Alignment:
| Q |
58 |
attttgaaatatctcctcattcctattcctccaaatttcccaacatgtcac |
108 |
Q |
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| T |
29837229 |
attttgaaatatctcctcatttctgttcttccaaatctcccaacatatcac |
29837179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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