View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7812_low_1 (Length: 608)

Name: NF7812_low_1
Description: NF7812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7812_low_1
NF7812_low_1
[»] chr2 (1 HSPs)
chr2 (2-593)||(12689707-12690295)
[»] chr5 (4 HSPs)
chr5 (164-348)||(20678556-20678740)
chr5 (368-491)||(26863445-26863569)
chr5 (492-553)||(20679805-20679866)
chr5 (486-553)||(23421574-23421640)
[»] chr8 (6 HSPs)
chr8 (144-288)||(14367702-14367846)
chr8 (256-317)||(18974753-18974814)
chr8 (121-223)||(18974819-18974925)
chr8 (494-550)||(2236-2290)
chr8 (494-553)||(14673570-14673628)
chr8 (496-552)||(25548139-25548193)
[»] chr6 (3 HSPs)
chr6 (144-288)||(19575709-19575853)
chr6 (496-549)||(4282658-4282711)
chr6 (496-552)||(22622465-22622519)
[»] chr3 (3 HSPs)
chr3 (252-317)||(19806867-19806932)
chr3 (121-223)||(19806760-19806866)
chr3 (496-553)||(20012350-20012405)
[»] chr1 (3 HSPs)
chr1 (368-491)||(19749769-19749893)
chr1 (492-553)||(20963514-20963576)
chr1 (494-553)||(15157945-15158002)
[»] chr7 (3 HSPs)
chr7 (256-317)||(5331060-5331121)
chr7 (121-223)||(5330949-5331055)
chr7 (494-553)||(550543-550601)
[»] scaffold0013 (1 HSPs)
scaffold0013 (494-550)||(135652-135706)
[»] chr4 (1 HSPs)
chr4 (494-550)||(722943-722998)


Alignment Details
Target: chr2 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 2 - 593
Target Start/End: Complemental strand, 12690295 - 12689707
Alignment:
Q  2 gtgagatgaatttggaggtttggaaacgttttaccaatcgtggctattgagatggcatacaggagctattctcataacagttaattgtgtatgattatat 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12690295 gtgagatgaatttggaggtttggaaacgttttaccaatcgtggctattgagatggcatacaggagctattctcataacaattaattgtgtatgattatat 12690196  T
Q  102 atttaattgaaacgatgcaaaataatagaggaacttttatcgtatatgccgatgtctcaaacatgtgaacacacttattttgaagcttttcaaacatcga 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  12690195 atttaattgaaacgatgcaaaataatagaggaacttttatcgtatacgctgatgtctccaacatgtgaacacacttattttaaagcttttcaaacatcga 12690096  T
Q  202 tgaactacaatcatgataatgatgccttcctttgaaaccgacaaaatatgagcaaaaacttatctggtctttgagtatgattgcttgtggctttctttct 301  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  12690095 tgaacgacaatcatgataatgatgccttcctttgaaaccgacaaaatatgagcaaaaacttatctggtctttgagtctgattgcttgcggctttctttct 12689996  T
Q  302 agcagcggcgatgatatggattttcgtgtgtagaccttcctgaggacctgaacgtatgaataatggtgcacatggttgtcgatgcctccgtagatgacgt 401  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12689995 agcagcggcgatgatatggattttcgtgtgtagaccttcatgaggacctgaacgtatgaataatggtgcacatggttgtcgatgcctccgtagatgacgt 12689896  T
Q  402 tgatattgtttctcggccgcatcacaagtgatagggtttgcggctgcgacatcaacttcatgatcacctcggtataattgattaggtttattagggtttc 501  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||   ||||||||||    
T  12689895 tgatattgtttctcggccgcatcaccagtgatggggtttgcggctgcgacatcaacgtcatgatcacctcggtataattgattaggt---ttagggtttc 12689799  T
Q  502 caaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctcttgttaaaagtacaataatcgaattagaattagggtttgtat 593  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12689798 caaatcacgattcgtgattcagaaaacacggtcaaggttagttttacctcttgttaaaagtacaataatcaaattagaattagggtttgtat 12689707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 2e-66; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 164 - 348
Target Start/End: Original strand, 20678556 - 20678740
Alignment:
Q  164 atgtgaacacacttattttgaagcttttcaaacatcgatgaactacaatcatgataatgatgccttcctttgaaaccgacaaaatatgagcaaaaactta 263  Q
    |||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  20678556 atgtgaacacacttattttgaagcttttcaaacatcaatgaacgagaatcatgataatgatgccttcctttgaaacctacaaaatatgagcgaaaactta 20678655  T
Q  264 tctggtctttgagtatgattgcttgtggctttctttctagcagcggcgatgatatggattttcgtgtgtagaccttcctgaggac 348  Q
    | |||||||||||| ||||| |||| |||||||||||||||| || |||||||||||||||||| ||||| |||||| |||||||    
T  20678656 tatggtctttgagtctgattccttgcggctttctttctagcaacgacgatgatatggattttcgcgtgtacaccttcgtgaggac 20678740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 368 - 491
Target Start/End: Original strand, 26863445 - 26863569
Alignment:
Q  368 tgcacatggttgtcgatgcctccgtagatgacgttgatattgtttctcggccgcatcacaagtgatagggtttgcggctgcgaca-tcaacttcatgatc 466  Q
    ||||||||||||||||||||||| |||||||||||  ||||| |||| ||| ||||||  |  ||| |||||||| ||||||||| |||||  |||||||    
T  26863445 tgcacatggttgtcgatgcctccatagatgacgttcgtattgcttcttggcggcatcatcaacgatggggtttgcagctgcgacattcaacgccatgatc 26863544  T
Q  467 acctcggtataattgattaggttta 491  Q
     |||||| |||||||||||||||||    
T  26863545 ccctcggcataattgattaggttta 26863569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 492 - 553
Target Start/End: Original strand, 20679805 - 20679866
Alignment:
Q  492 ttagggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctctt 553  Q
    ||||||||||||| |||||||| | ||||||||||| | |||||||||||||||||||||||    
T  20679805 ttagggtttccaagtcacgatttgagattcagaaaatgtggtcaaggttagttttacctctt 20679866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 486 - 553
Target Start/End: Complemental strand, 23421640 - 23421574
Alignment:
Q  486 ggtttattagggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctctt 553  Q
    ||||| ||||||||||||||||| |||| | ||||||| ||||| |||||||||| ||||||||||||    
T  23421640 ggtttcttagggtttccaaatcatgatttgcgattcag-aaacgtggtcaaggtttgttttacctctt 23421574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 5e-45; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 144 - 288
Target Start/End: Complemental strand, 14367846 - 14367702
Alignment:
Q  144 tatatgccgatgtctcaaacatgtgaacacacttattttgaagcttttcaaacatcgatgaactacaatcatgataatgatgccttcctttgaaaccgac 243  Q
    |||||||  ||||||| || ||||||||||| |||||||||||||||  ||| ||| |||||| |||||||||||||||||||| |||||||||||||||    
T  14367846 tatatgctaatgtctccaaaatgtgaacacatttattttgaagctttcaaaatatcaatgaacgacaatcatgataatgatgccatcctttgaaaccgac 14367747  T
Q  244 aaaatatgagcaaaaacttatctggtctttgagtatgattgcttg 288  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||    
T  14367746 aaaatatgagcgaaaacttatctggtctttgagtctgattgcttg 14367702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 18974814 - 18974753
Alignment:
Q  256 aaaacttatctggtctttgagtatgattgcttgtggctttctttctagcagcggcgatgata 317  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  18974814 aaaacttatctggtctttgagtttgattgcttgcggctttctttctagcagcggcgatgata 18974753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 121 - 223
Target Start/End: Complemental strand, 18974925 - 18974819
Alignment:
Q  121 aaataatagaggaacttttatcgtatat----gccgatgtctcaaacatgtgaacacacttattttgaagcttttcaaacatcgatgaactacaatcatg 216  Q
    |||||||||||||||||||||| |||||    ||  ||||||| || |||||||| || ||||||||||||||| |||||||| |||||| |||||||||    
T  18974925 aaataatagaggaacttttatcatatatatatgctaatgtctccaaaatgtgaacgcatttattttgaagctttccaaacatcaatgaacgacaatcatg 18974826  T
Q  217 ataatga 223  Q
    |||||||    
T  18974825 ataatga 18974819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 550
Target Start/End: Original strand, 2236 - 2290
Alignment:
Q  494 agggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacct 550  Q
    ||||||||||||||||||||  |||||||| ||||| |||| |||||||||||||||    
T  2236 agggtttccaaatcacgatt-ttgattcag-aaacgtggtcgaggttagttttacct 2290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 553
Target Start/End: Complemental strand, 14673628 - 14673570
Alignment:
Q  494 agggtttccaaatcac-gattcgtgattcagaaaacgcggtcaaggttagttttacctctt 553  Q
    |||||||||||||||| ||||| ||||||||||| || |||| ||||||||||||||||||    
T  14673628 agggtttccaaatcacagattc-tgattcagaaa-cgtggtcgaggttagttttacctctt 14673570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 552
Target Start/End: Complemental strand, 25548193 - 25548139
Alignment:
Q  496 ggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctct 552  Q
    ||||||||||||||||||  ||||||||||| || |||| |||||||||||||||||    
T  25548193 ggtttccaaatcacgattt-tgattcagaaa-cgtggtcgaggttagttttacctct 25548139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 144 - 288
Target Start/End: Original strand, 19575709 - 19575853
Alignment:
Q  144 tatatgccgatgtctcaaacatgtgaacacacttattttgaagcttttcaaacatcgatgaactacaatcatgataatgatgccttcctttgaaaccgac 243  Q
    |||||||  ||||||| || ||||||||||| |||||||||||||||  ||| ||| |||||| ||||||||||||||||||||||||||||||| |  |    
T  19575709 tatatgctaatgtctccaaaatgtgaacacatttattttgaagctttcaaaatatcaatgaacgacaatcatgataatgatgccttcctttgaaagcttc 19575808  T
Q  244 aaaatatgagcaaaaacttatctggtctttgagtatgattgcttg 288  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||    
T  19575809 aaaatatgagcgaaaacttatctggtctttgagtctgattgcttg 19575853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 496 - 549
Target Start/End: Original strand, 4282658 - 4282711
Alignment:
Q  496 ggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacc 549  Q
    |||||||||||||||||| ||||| ||||||||| |||||||||||||||||||    
T  4282658 ggtttccaaatcacgatttgtgatccagaaaacgtggtcaaggttagttttacc 4282711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 552
Target Start/End: Original strand, 22622465 - 22622519
Alignment:
Q  496 ggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctct 552  Q
    ||||||||||||||||||  ||||||||||| || |||| |||||||||||||||||    
T  22622465 ggtttccaaatcacgattt-tgattcagaaa-cgtggtcgaggttagttttacctct 22622519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 252 - 317
Target Start/End: Original strand, 19806867 - 19806932
Alignment:
Q  252 agcaaaaacttatctggtctttgagtatgattgcttgtggctttctttctagcagcggcgatgata 317  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  19806867 agcaaaaacttatctggtctttgagtttgattgcttgcggctttctttctagcagcggcgatgata 19806932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 121 - 223
Target Start/End: Original strand, 19806760 - 19806866
Alignment:
Q  121 aaataatagaggaacttttatcgtatat----gccgatgtctcaaacatgtgaacacacttattttgaagcttttcaaacatcgatgaactacaatcatg 216  Q
    |||||||||||||||||||||| |||||    ||  ||||||| || |||||||| || ||||||||||||||| |||||||| |||||| |||||||||    
T  19806760 aaataatagaggaacttttatcatatatatatgctaatgtctccaaaatgtgaacgcatttattttgaagctttccaaacatcaatgaacgacaatcatg 19806859  T
Q  217 ataatga 223  Q
    |||||||    
T  19806860 ataatga 19806866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 553
Target Start/End: Original strand, 20012350 - 20012405
Alignment:
Q  496 ggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctctt 553  Q
    ||||||||||||||||||  ||||||||||| || |||| ||||||||||||||||||    
T  20012350 ggtttccaaatcacgattt-tgattcagaaa-cgtggtcgaggttagttttacctctt 20012405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 368 - 491
Target Start/End: Complemental strand, 19749893 - 19749769
Alignment:
Q  368 tgcacatggttgtcgatgcctccgtagatgacgttgatattgtttctcggccgcatcacaagtgatagggtttgcggctgcgaca-tcaacttcatgatc 466  Q
    |||||||||||||||||||||||| ||||||||||  ||||| |||| ||| ||||||  |  ||| |||||||||||||||||| |||||  |||||||    
T  19749893 tgcacatggttgtcgatgcctccgcagatgacgttcgtattgcttcttggcggcatcatcaacgatggggtttgcggctgcgacattcaacgccatgatc 19749794  T
Q  467 acctcggtataattgattaggttta 491  Q
     |||||| |||||||||||||||||    
T  19749793 ccctcggcataattgattaggttta 19749769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 492 - 553
Target Start/End: Original strand, 20963514 - 20963576
Alignment:
Q  492 ttagggtttccaaatcacgattc-gtgattcagaaaacgcggtcaaggttagttttacctctt 553  Q
    ||||||||||||||||| ||||  | ||||||||||||| ||||||||||| |||||||||||    
T  20963514 ttagggtttccaaatcaagattttgcgattcagaaaacgtggtcaaggttaattttacctctt 20963576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 553
Target Start/End: Original strand, 15157945 - 15158002
Alignment:
Q  494 agggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctctt 553  Q
    ||||||||||||||||||||  ||||||||||| || |||| ||||||||||||||||||    
T  15157945 agggtttccaaatcacgattt-tgattcagaaa-cgtggtcgaggttagttttacctctt 15158002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 5331060 - 5331121
Alignment:
Q  256 aaaacttatctggtctttgagtatgattgcttgtggctttctttctagcagcggcgatgata 317  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  5331060 aaaacttatctggtctttgagtttgattgcttgcggctttctttctagcagcggcgatgata 5331121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 121 - 223
Target Start/End: Original strand, 5330949 - 5331055
Alignment:
Q  121 aaataatagaggaacttttatcgtatat----gccgatgtctcaaacatgtgaacacacttattttgaagcttttcaaacatcgatgaactacaatcatg 216  Q
    |||||||||||||||||||||| |||||    ||  ||||||| || |||||||| || ||||||||||||||| |||||||| |||||| |||||||||    
T  5330949 aaataatagaggaacttttatcatatatatatgctaatgtctccaaaatgtgaacgcatttattttgaagctttccaaacatcaatgaacgacaatcatg 5331048  T
Q  217 ataatga 223  Q
    |||||||    
T  5331049 ataatga 5331055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 553
Target Start/End: Original strand, 550543 - 550601
Alignment:
Q  494 agggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctctt 553  Q
    ||||||||| |||||||||| | |||||||||| || |||||||||||||||||| ||||    
T  550543 agggtttccgaatcacgatttgcgattcagaaa-cgtggtcaaggttagttttacgtctt 550601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 550
Target Start/End: Original strand, 135652 - 135706
Alignment:
Q  494 agggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacct 550  Q
    ||||||||||||||||||||  |||||||| ||||| |||| |||||||||||||||    
T  135652 agggtttccaaatcacgatt-ttgattcag-aaacgtggtcgaggttagttttacct 135706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 550
Target Start/End: Complemental strand, 722998 - 722943
Alignment:
Q  494 agggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacct 550  Q
    ||||||| | |||||||||| ||||||| |||| || ||||||||||||||||||||    
T  722998 agggtttacgaatcacgatttgtgattcggaaa-cgtggtcaaggttagttttacct 722943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University