View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7812_low_10 (Length: 327)
Name: NF7812_low_10
Description: NF7812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7812_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 14 - 327
Target Start/End: Original strand, 2785917 - 2786230
Alignment:
| Q |
14 |
aacctgtgtagaagcagtaagatatcccgaactagtaattactgatggtccagaaaatgccgtgccacgctcaatttttacgccacgctcaacttttacc |
113 |
Q |
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| T |
2785917 |
aacctgtgtagaagcagtaagatatcccgaactagtaattactggcggtccagaagatgtcgtgccacgctcaatttttacgacacgctcaacttttacc |
2786016 |
T |
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| Q |
114 |
ggcaatggctcaacttttacaggcactggctcaacttttacagtagcaggagtcacattcacattaggtattggctgccggttagcaatagatccattca |
213 |
Q |
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| T |
2786017 |
ggcaatggctcaacttttacaggcactggctcagcttttacagtagcaggagtcacactgacattaggtattggctgccggttagcaatagatccattca |
2786116 |
T |
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| Q |
214 |
ccgatggcaatgaagatgggggtgcccccgtaactggtgcgacagatacatcatcaactttaacatgaatttgatttgaaggcaagtttgttgttccgga |
313 |
Q |
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| T |
2786117 |
ccgatggcaatgaagatgggggtgcccccgtaactggtgcgacagatacatcgtcaactttaacatgaatttgatttgaaggcaagtttgttgttccgga |
2786216 |
T |
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| Q |
314 |
aggactcaaggcag |
327 |
Q |
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| T |
2786217 |
aggactcaaggcag |
2786230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 297
Target Start/End: Complemental strand, 22518378 - 22518297
Alignment:
| Q |
216 |
gatggcaatgaagatgggggtgcccccgtaactggtgcgacagatacatcatcaactttaacatgaatttgatttgaaggca |
297 |
Q |
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| T |
22518378 |
gatggcaatgaagatgggggtgcccccgtaactggtgtggcagatacagcgtctacttttacaggactttgatttgaaggca |
22518297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 22519795 - 22519728
Alignment:
| Q |
147 |
acttttacagtagcaggagtcacattcacattaggtattggctgccggttagcaatagatccattcac |
214 |
Q |
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| T |
22519795 |
acttttacagtagcaggagtcacattcccagcaggtattggttgccggttcggaatagatccattcac |
22519728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 22520342 - 22520289
Alignment:
| Q |
14 |
aacctgtgtagaagcagtaagatatcccgaactagtaattactgatggtccaga |
67 |
Q |
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|||||||| ||||||||||||| |||| |||||||| |||||||| |||||||| |
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| T |
22520342 |
aacctgtgcagaagcagtaagagatccagaactagttattactgacggtccaga |
22520289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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