View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7812_low_12 (Length: 310)
Name: NF7812_low_12
Description: NF7812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7812_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 1864883 - 1865172
Alignment:
| Q |
1 |
ttcatcatttcctacatctaccggatttcagtatcacgttgttccatcaccaccaaattttaatggatcacatatcaattctagtaggtttcttcttact |
100 |
Q |
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| T |
1864883 |
ttcatcatttcctacatctatcggatttcagtatcacgttgttccatcaccaccaaattttaatggatcacatatcaattctagtaggtttcttcttact |
1864982 |
T |
|
| Q |
101 |
ttctgacacttatatgcaactctagtataatatgacatggtttaaagacaatatttatgaactttataattctgaaaatttaaaaaagacatttattgtt |
200 |
Q |
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| T |
1864983 |
ttctgacacttatatgcaactctagtataatatgacatggtttaaagacaatatttatgaactttataattctgaaaatttaaaaaagacatttattgtt |
1865082 |
T |
|
| Q |
201 |
ttggaattgaaagcaatgaagttacatgatttattattctaagtatgatattcaaagttcaattgtaatctattttgttttccggctcta |
290 |
Q |
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| T |
1865083 |
ttggaattgaaagcaatgaagttacatgatttattattctaagtatgatattcaaagttcaattgtaatctattttgttttccggctcta |
1865172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 51575794 - 51575688
Alignment:
| Q |
23 |
ggatttcagtatcacgttgttccatcaccaccaaattttaatggatcacatatcaattctagtaggtttcttcttactttctgacacttatatgcaactc |
122 |
Q |
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|||||||| |||| ||||||||||||| || ||||| |||||||||||||||| || |||||| | ||||||||| ||||| ||||||| ||||||||| |
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| T |
51575794 |
ggatttcatcatcatgttgttccatcactacaaaattctaatggatcacatatccatgctagtaagattcttcttattttctcacacttaaatgcaactc |
51575695 |
T |
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| Q |
123 |
tagtata |
129 |
Q |
| |
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|| |||| |
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| T |
51575694 |
taatata |
51575688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 51575578 - 51575544
Alignment:
| Q |
230 |
tttattattctaagtatgatattcaaagttcaatt |
264 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
51575578 |
tttattattctaagcatgatattcaaagttcaatt |
51575544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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