View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7812_low_13 (Length: 310)
Name: NF7812_low_13
Description: NF7812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7812_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 3491216 - 3491508
Alignment:
| Q |
1 |
agtaagcttaaactcaatggaggaaaagtgttgaaggaaaatgctactgatggtgatgaaactgttgctataactggtcttgagaaaattgttttgagac |
100 |
Q |
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| T |
3491216 |
agtaagcttaaactcaatggaggaaaagtgttgaaggaaaatgctactgatggtgatgaaactgttgctataactggtcttgagaaaattgttttgagac |
3491315 |
T |
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| Q |
101 |
atcaagatgtgaaggggaagaaagatgaacaagtattgttgaataatgtgatcgaggaaacagctagaaaactggttgaacctcagaagggtaaggtgaa |
200 |
Q |
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| T |
3491316 |
atcaagatgtgaaggggaagaaagatgaacaagtattgttgaataatgtgatcgaggaaacagctagtaaactggttgaacctcagaagggtaaggtgaa |
3491415 |
T |
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| Q |
201 |
agctttggttggtgcatttgaaactttaatttctctcaacgagnnnnnnncttgagaaaatgctctcaattgatgtatcggtagacattttct |
293 |
Q |
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| T |
3491416 |
agctttggttggtgcatttgaaactttaatttctctcaacgagaaaaaaacttgagaaaatgctctcaattgatgtatcggtagacattttct |
3491508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 89 - 236
Target Start/End: Original strand, 4346453 - 4346600
Alignment:
| Q |
89 |
ttgttttgagacatcaagatgtgaaggggaagaaagatgaacaagtattgttgaataatgtgatcgaggaaacagctagaaaactggttgaacctcagaa |
188 |
Q |
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||||||||||||| |||||| | ||| |||||||||| ||||| |||||||||||||||||| ||||||||||| || ||||| |||||| || ||| |
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| T |
4346453 |
ttgttttgagacaccaagatattgaggacaagaaagatgcacaaggattgttgaataatgtgattgaggaaacagcaagtaaacttgttgaagctaggaa |
4346552 |
T |
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| Q |
189 |
gggtaaggtgaaagctttggttggtgcatttgaaactttaatttctct |
236 |
Q |
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| T |
4346553 |
gagcaaggttaaagcattggttggtgcatttgaaactgttatttctct |
4346600 |
T |
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