View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7812_low_14 (Length: 275)
Name: NF7812_low_14
Description: NF7812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7812_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 1863462 - 1863685
Alignment:
| Q |
13 |
aatatttcgaatcagtagctaggttcgaggagcacatgacttttcatagttgggttaatattaagacttgataagttatcaaaggtttaccaatagtgtt |
112 |
Q |
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| T |
1863462 |
aatatttcgaatcagtagctaggttcgaggagcacatgacttttcatagttgggttaatattaagacttgataagttatcaaaggtttaccaatagtgtt |
1863561 |
T |
|
| Q |
113 |
gcgtaattgtgttccttcttttccctcatttccctttcctgaaatctcttacttattctatattctgtttggttcaccctacatgtatgagaaattgcta |
212 |
Q |
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| T |
1863562 |
gcgtaattgtgttccttcttttccctcatttccctttcctgaaatctcttacttattctatattctgtttggttcaccctacatgtatgagaaattgcta |
1863661 |
T |
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| Q |
213 |
acaacaaatttatatgcctcatta |
236 |
Q |
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|||||||||||||||||||||||| |
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| T |
1863662 |
acaacaaatttatatgcctcatta |
1863685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 1864476 - 1864516
Alignment:
| Q |
235 |
taaatgtaacatgttttatttaattttcaattcttgtttat |
275 |
Q |
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| T |
1864476 |
taaatgtaacatgttttatttaattttcaattcttgtttat |
1864516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 274
Target Start/End: Complemental strand, 51576285 - 51576242
Alignment:
| Q |
231 |
tcattaaatgtaacatgttttatttaattttcaattcttgttta |
274 |
Q |
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| T |
51576285 |
tcattaattgttacatgttttaattaattttcaattcttgttta |
51576242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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