View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7812_low_17 (Length: 241)
Name: NF7812_low_17
Description: NF7812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7812_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 49604950 - 49604719
Alignment:
| Q |
1 |
aacaaacaagacagattaaagggttgttgttgaatcaaattgaacaccgaaatcatgggtgtgtctgtaacaattatagtccttatcatttctcttcatc |
100 |
Q |
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| T |
49604950 |
aacaaacaagacagattaaagggtttttgttgaatcaaattgaacaccgaaatcatgggtgtgtctgtaacaattatagtccttatcatttctcttcatc |
49604851 |
T |
|
| Q |
101 |
tcttagctttcgttttcgctattggcgctgaacgacgtcgtagtgaggtaatctttaatctcaacactaatcttgcttttttgtttcttaaatctgatta |
200 |
Q |
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| T |
49604850 |
tcttagctttcgttttcgctattggcgctgaacgacgtcgtagtgaggtaatctttaatctcaacactaatcttgcttttttgtttcttaaatctgatta |
49604751 |
T |
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| Q |
201 |
atctcttttcaggccaaagtggttcctgatga |
232 |
Q |
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| T |
49604750 |
atctcttttcaggccaaagtggttcctgatga |
49604719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 9767333 - 9767413
Alignment:
| Q |
23 |
gttgttgttgaatcaaattgaacaccgaaatcatgggtgtgtctgtaacaattatagtccttatcatttctcttcatctct |
103 |
Q |
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| T |
9767333 |
gttgttgttgaatcaaattgaacatctaattaatgggtgtgtctgtaacaatcatagtgcttatcatttatctacatctct |
9767413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 47160948 - 47161016
Alignment:
| Q |
23 |
gttgttgttgaatcaaattgaacaccgaaatcatgggtgtgtctgtaacaattatagtccttatcattt |
91 |
Q |
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|||||||||||||||||||||||| | || | |||||||||||||||||||| ||||| |||||||||| |
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| T |
47160948 |
gttgttgttgaatcaaattgaacatctaattaatgggtgtgtctgtaacaatcatagtgcttatcattt |
47161016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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