View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7812_low_3 (Length: 435)
Name: NF7812_low_3
Description: NF7812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7812_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Complemental strand, 16882418 - 16882024
Alignment:
| Q |
19 |
attaggttcgttacctcttctaaatttcaaggggcgtcacctgtattgatcaacgaggtcttgaatattattgttttagtacctattaatgtttagtaat |
118 |
Q |
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| T |
16882418 |
attaggttcgttacctcttctaaatttcaaggggcgtcacctgtattgatcaacgaggtcttgaatattattgttttagtacctataaatgtttagtaat |
16882319 |
T |
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| Q |
119 |
ggtgacaatgtcttaaaattttcaaggagttgttagtccctacaaaattttgtagagaccataaatatatttcaaggtgcagtaaattttcattaaatat |
218 |
Q |
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| T |
16882318 |
gttgacaatgtcttata-ttttcaaggagttgttagtccctacaaaattttgtagagaccataaatatatttcaaggtgcagtaaattttcattaaatat |
16882220 |
T |
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| Q |
219 |
taatgtagaacaaatttacgacaaccataaaatgtattgatctgtaatatatgtagaaccttaatattaactctaaaagtttggtctagtggtaaaatga |
318 |
Q |
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| T |
16882219 |
taatgtagaacaaatttacgacaactataaaatatattgatccgtaatatatgtagaaccttaatattaactctaaaagtttggtctagtggtaaaataa |
16882120 |
T |
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| Q |
319 |
catatcttaaacatggaggtttcaggttcaagccccatcattgattttgaaatgaggtaaatgtaatttcctttacaggggttctctgaatcctaa |
414 |
Q |
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| T |
16882119 |
catatcttgaacctagaggtttcaggttcaagctccatcattgattttgaaatgaggtaaatgtaatttcctttatagaggttctctgagtcctaa |
16882024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 24252663 - 24252695
Alignment:
| Q |
295 |
aagtttggtctagtggtaaaatgacatatctta |
327 |
Q |
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| T |
24252663 |
aagtttagtctagtggtaaaatgacatatctta |
24252695 |
T |
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