View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7812_low_4 (Length: 415)
Name: NF7812_low_4
Description: NF7812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7812_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 397
Target Start/End: Complemental strand, 31010117 - 31009735
Alignment:
| Q |
15 |
tcataaacaggattcatcatcaaaggaaaggtgaaaaagagattgacacaaagacctaattgaaccaaagcagtaatcattccttgccctagatttgtag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31010117 |
tcataaacaggattcatcatcaaaggaaaggtgaaaaagagattgacacaaagacctaattgtaccaaagcagtaatcattccttgccctagatttgtag |
31010018 |
T |
|
| Q |
115 |
taataatcccttgagttgcttcaccaaaagcaaagtaacctaaagtagcaaaacctccatacaacagaaaaattagaaacattcccaaacccaaaactcc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
31010017 |
taataatcccttgagttgcttcaccaaaagcaaagtaacctaaagtagcaaaacctccatacaatagaaaaattaggaacattcccaaacccaaaactcc |
31009918 |
T |
|
| Q |
215 |
accaaatttatctttatcttttgcttctgattccaaaggcaaaaccattcctattccttcaaaagaataaacagccacacctaaaccatatnnnnnnnca |
314 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31009917 |
accaaatttatctttatcttttgcttctgattccaaaggcaaaaccattcctattccttcaaaagaataaacagccacacctaaaccatatagaaaaaca |
31009818 |
T |
|
| Q |
315 |
gataaaccaccaaaagtcttcaaaggtggcctattttccaaaaagacaaaaacatcctcaaccattacaactcccatagctcc |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31009817 |
gataaaccaccaaaagtcttcaaaggtggcctattttccaaaaagacaaaaacatcctcaaccattacaactcccatagctcc |
31009735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 9782564 - 9782853
Alignment:
| Q |
15 |
tcataaacaggattcatcatcaaaggaaaggtgaaaaagagattgacacaaagacctaattgaaccaaagcagtaatcattccttgccctagatttgtag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| || | ||| | ||| | ||| || ||||||||||||| | || |||| ||||| |||| ||| ||| |
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| T |
9782564 |
tcataaacaggattcatcatcaaaggaaatgtaataaacaaattaatacatagccctaattgaaccataacacctatcacaccttgacctaaattattag |
9782663 |
T |
|
| Q |
115 |
taataatcccttgagttgcttcaccaaaagcaaagtaacctaaagtagcaaaacctccatacaacagaaaaattagaaacattcccaaacccaaaactcc |
214 |
Q |
| |
|
||||||| | | |||| |||||||||||||||| ||||||||| | |||| | ||| | || | | |||| | | ||| || || || ||||| | |
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| T |
9782664 |
taataatatccttagtttcttcaccaaaagcaaaataacctaaaacaccaaatgcaccaaataatatagaaatcatacccatccctaaccctaaaaccct |
9782763 |
T |
|
| Q |
215 |
accaaatttatctttatcttttgcttctgattccaaaggcaaaaccattcctattccttcaaaagaataaacagccacacctaaaccata |
304 |
Q |
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|||||||| || |||||||| | || ||||||||||||||||||||| || |||||||||| ||||||||| ||||| | |||||| |
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| T |
9782764 |
tccaaatttctccttatctttagtctcactttccaaaggcaaaaccattccaatcccttcaaaagcataaacagctacaccaataccata |
9782853 |
T |
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