View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7812_low_7 (Length: 385)
Name: NF7812_low_7
Description: NF7812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7812_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 32309738 - 32310111
Alignment:
| Q |
1 |
caaacctaagagaaaactcattctcctctttcttgagtaaattgacatgtaatccaaacccctacttccaaccatcttgcatattctttcaaatacgtgt |
100 |
Q |
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| T |
32309738 |
caaacctaagagaaaactcattctcctctttcttgagtaaattgacatgtaatccaaacccccacttccaaccatcttgcatattctttcaaataagtgt |
32309837 |
T |
|
| Q |
101 |
ttgatcatataaatgaatgtagaatttgagaaatcggagaagataatattaggagcaaaggaagggctaaagaattttgttcagattactagttaagctt |
200 |
Q |
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| T |
32309838 |
ttgatcatataaatgaatgtagaatttgagaaatcggagaagataatattaggagcaaaggaagggctaaagaattttattcagattactagttaagctt |
32309937 |
T |
|
| Q |
201 |
tattcaactatgcagt-----ttaaataagatatacagtaattttactagttgtggtttgtgcaacttagcaactgttttggttaatgtgcggtcgatta |
295 |
Q |
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| T |
32309938 |
tattcaactaggcagtttaaattaaataagatatacagtaattttactagttgtggtttgtgcaacttagcaactgttttggttaatgtgcggtcgatca |
32310037 |
T |
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| Q |
296 |
gtaagctaagacaatcttcccaacaaagaggaaaatcttaggtgttcggtagattattaagctaagacaatcct |
369 |
Q |
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| T |
32310038 |
gtaagctaagacaatcttcccaacaaagaggaaaatcttaggtgttcggtagattattaagctaagacaatcct |
32310111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 32310084 - 32310138
Alignment:
| Q |
286 |
cggtcgattagtaagctaagacaatcttcccaacaaagaggaaaatcttaggtgt |
340 |
Q |
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|||| ||||| ||||||||||||||| ||||| |||||||||||| |||| |||| |
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| T |
32310084 |
cggtagattattaagctaagacaatcctcccagcaaagaggaaaaccttacgtgt |
32310138 |
T |
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