View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7812_low_8 (Length: 380)
Name: NF7812_low_8
Description: NF7812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7812_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 359
Target Start/End: Complemental strand, 7110144 - 7109800
Alignment:
| Q |
16 |
attattcttttgtagttttagatggcctcaagatcgccgtcgacattatcttgaagttttcaacgaaaagcatatgccatgcgataattgcacatgggta |
115 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7110144 |
attattcttttgtagttttagatggcatcaagatcgccgtcgtcattatcttgatgttttcaacgaaaagcatatgccatgcgataattgcacatgggta |
7110045 |
T |
|
| Q |
116 |
atacatgcaaagggaggttgtttgaatggacaatgtattccttggagaagcatccattaatggatgcatacaacgcttcaaagtggtagcaaa-taaagg |
214 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| ||||| |
|
|
| T |
7110044 |
atacatgcaaatggaggctgtttgaatggacaatgtattccttggaaaagcatccattaatggatgcatacaacgcttcaaagtggtcgaaaacaaaagg |
7109945 |
T |
|
| Q |
215 |
ggttggatgaattgggacatgcccaccctcaaactttttaaattatttattttaatatatattggttgtgagaacttagccttgtaatttcaataaactc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7109944 |
ggttggatgaattgggacatgcccaccctcaaactttttaaattatttattttaatatatattggttgtgagaacttagccttgtaatttcaataaactc |
7109845 |
T |
|
| Q |
315 |
attcaaatctcagcgggtgacggttgtaaaatgaccaatagtacc |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7109844 |
attcaaatctcagcgggtgacggttgtaaaatgaccaatagtacc |
7109800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 356
Target Start/End: Complemental strand, 7115998 - 7115887
Alignment:
| Q |
246 |
aactttttaaattatttattttaatatatattggttgtgagaacttagccttgtaatttcaataaactcattcaaatctcagcgggtg-acggttgtaaa |
344 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||| ||| | ||| ||||||| ||||| ||||||||||||||||| |||| | ||||||||||| |
|
|
| T |
7115998 |
aactttttaaaatatttattttaatatacattggttgtaagagcgtagtcttgtaagttcaaggaactcattcaaatctcatcgggggaacggttgtaaa |
7115899 |
T |
|
| Q |
345 |
atgaccaatagt |
356 |
Q |
| |
|
||| ||| |||| |
|
|
| T |
7115898 |
atggccagtagt |
7115887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 171 - 301
Target Start/End: Original strand, 6616089 - 6616221
Alignment:
| Q |
171 |
attaatggatgcatacaacgcttcaaagtggtagcaaataaaggggttggatgaattgggacatgcccaccctcaaactttttaaattatttatttta-- |
268 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| ||||| |||||||||||||||||||||| |||| |||||| |||| ||||||||||||||||| |
|
|
| T |
6616089 |
attaatggatgcaaacaacacttcaaagtggtcgcaaagaaaggggttggatgaattgggagatgcacacccttcaactccttaaattatttattttaat |
6616188 |
T |
|
| Q |
269 |
atatatattggttgtgagaacttagccttgtaa |
301 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||| |
|
|
| T |
6616189 |
atatatattggttgtaagagcttagccttgtaa |
6616221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 211 - 327
Target Start/End: Original strand, 6608904 - 6609020
Alignment:
| Q |
211 |
aaggggttggatgaattgggacatgcccaccctcaaactttttaaattatttattttaatatatattggttgtgagaacttagccttgtaatttcaataa |
310 |
Q |
| |
|
||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||| ||||| ||| ||| |||||||| ||||| || |
|
|
| T |
6608904 |
aaggggttgaatgaattgggacatacccgccctcaaactttttaaattatttattttaatttatattagttgtaagagtttaaccttgtaaattcaagaa |
6609003 |
T |
|
| Q |
311 |
actcattcaaatctcag |
327 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
6609004 |
actcgttcaaatctcag |
6609020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 9145727 - 9145669
Alignment:
| Q |
216 |
gttggatgaattgggacatgcccaccctcaaactttttaaattatttattttaatatat |
274 |
Q |
| |
|
|||||||||| | ||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9145727 |
gttggatgaaattggacatgccaaccctccaactttttaaattatttattttaatatat |
9145669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 9180703 - 9180763
Alignment:
| Q |
214 |
gggttggatgaattgggacatgcccaccctcaaactttttaaattatttattttaatatat |
274 |
Q |
| |
|
|||||||||||| | |||| |||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9180703 |
gggttggatgaaattggacgtgccaaccctccaactttttaaattatttattttaatatat |
9180763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University