View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7813_low_1 (Length: 722)

Name: NF7813_low_1
Description: NF7813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7813_low_1
NF7813_low_1
[»] chr4 (27 HSPs)
chr4 (366-705)||(45820733-45821072)
chr4 (296-365)||(23610559-23610628)
chr4 (294-367)||(33247215-33247288)
chr4 (296-365)||(12153088-12153157)
chr4 (297-365)||(5763252-5763320)
chr4 (297-365)||(19902008-19902076)
chr4 (297-365)||(56558196-56558264)
chr4 (296-366)||(5416556-5416626)
chr4 (296-365)||(12241497-12241566)
chr4 (296-365)||(52018700-52018769)
chr4 (297-365)||(47922165-47922233)
chr4 (296-362)||(38079809-38079875)
chr4 (296-365)||(17080729-17080798)
chr4 (296-365)||(18207129-18207198)
chr4 (296-357)||(34778346-34778407)
chr4 (296-351)||(3952259-3952314)
chr4 (296-375)||(24073524-24073603)
chr4 (297-354)||(12312593-12312650)
chr4 (296-365)||(39862434-39862503)
chr4 (297-354)||(33262642-33262699)
chr4 (303-363)||(25442271-25442331)
chr4 (298-357)||(37002332-37002391)
chr4 (298-357)||(56269158-56269217)
chr4 (298-366)||(5524373-5524441)
chr4 (297-357)||(31862310-31862370)
chr4 (297-365)||(36688145-36688214)
chr4 (297-365)||(37002208-37002277)
[»] chr7 (22 HSPs)
chr7 (12-295)||(46654368-46654652)
chr7 (296-373)||(45260516-45260594)
chr7 (296-365)||(21151069-21151138)
chr7 (296-353)||(7362497-7362554)
chr7 (296-354)||(9559143-9559201)
chr7 (296-365)||(12139245-12139312)
chr7 (296-360)||(4888389-4888453)
chr7 (297-365)||(25084818-25084886)
chr7 (296-365)||(44647882-44647948)
chr7 (296-363)||(47226163-47226229)
chr7 (296-358)||(16366442-16366504)
chr7 (296-358)||(18198180-18198242)
chr7 (298-363)||(6882149-6882214)
chr7 (297-363)||(29630967-29631033)
chr7 (298-370)||(19889115-19889187)
chr7 (298-361)||(32915880-32915943)
chr7 (210-273)||(46653907-46653970)
chr7 (303-363)||(8607960-8608020)
chr7 (201-269)||(17037957-17038025)
chr7 (298-357)||(32916104-32916163)
chr7 (47-85)||(17037505-17037543)
chr7 (305-363)||(47271205-47271263)
[»] scaffold0429 (2 HSPs)
scaffold0429 (12-295)||(3982-4266)
scaffold0429 (201-296)||(3497-3593)
[»] chr1 (17 HSPs)
chr1 (16-296)||(48167206-48167487)
chr1 (296-374)||(12380999-12381077)
chr1 (296-374)||(12385066-12385144)
chr1 (296-365)||(45977939-45978008)
chr1 (296-365)||(50484303-50484372)
chr1 (296-365)||(7841799-7841868)
chr1 (296-365)||(12151684-12151753)
chr1 (210-294)||(48166718-48166803)
chr1 (296-365)||(40328193-40328263)
chr1 (296-360)||(50294152-50294216)
chr1 (296-341)||(23862045-23862090)
chr1 (296-365)||(48327243-48327312)
chr1 (212-269)||(34153768-34153825)
chr1 (297-354)||(40988643-40988700)
chr1 (297-360)||(2845187-2845251)
chr1 (298-363)||(5047471-5047536)
chr1 (210-271)||(34153035-34153096)
[»] chr6 (13 HSPs)
chr6 (297-374)||(4804356-4804433)
chr6 (297-365)||(32737791-32737859)
chr6 (296-365)||(1249235-1249304)
chr6 (296-365)||(7162001-7162070)
chr6 (296-365)||(29698080-29698149)
chr6 (298-370)||(27826450-27826522)
chr6 (296-341)||(17944103-17944148)
chr6 (296-335)||(21159458-21159497)
chr6 (296-339)||(30460763-30460806)
chr6 (297-337)||(12412582-12412622)
chr6 (303-357)||(227660-227714)
chr6 (297-365)||(2142250-2142319)
chr6 (296-337)||(17398783-17398824)
[»] chr8 (17 HSPs)
chr8 (297-365)||(5033023-5033091)
chr8 (296-365)||(30426758-30426827)
chr8 (296-365)||(36991273-36991342)
chr8 (296-365)||(41511179-41511248)
chr8 (297-365)||(10652709-10652776)
chr8 (296-365)||(28069636-28069705)
chr8 (297-366)||(28318992-28319061)
chr8 (296-365)||(12177653-12177722)
chr8 (296-365)||(12422081-12422150)
chr8 (298-363)||(37966533-37966598)
chr8 (296-364)||(40695336-40695404)
chr8 (296-358)||(24101940-24102002)
chr8 (297-357)||(10672602-10672662)
chr8 (298-357)||(34612498-34612557)
chr8 (305-360)||(44888557-44888612)
chr8 (298-335)||(21492730-21492767)
chr8 (297-366)||(45113186-45113255)
[»] chr3 (21 HSPs)
chr3 (12-128)||(1253201-1253320)
chr3 (296-366)||(43720036-43720106)
chr3 (296-365)||(40851690-40851759)
chr3 (296-365)||(19830521-19830591)
chr3 (297-363)||(550906-550972)
chr3 (297-366)||(2229899-2229968)
chr3 (296-341)||(27033592-27033637)
chr3 (296-353)||(34373674-34373731)
chr3 (298-362)||(3009169-3009233)
chr3 (296-363)||(34373750-34373817)
chr3 (297-366)||(20485808-20485877)
chr3 (298-366)||(31523749-31523817)
chr3 (298-357)||(42613015-42613074)
chr3 (296-354)||(12402893-12402951)
chr3 (296-353)||(46167322-46167379)
chr3 (298-371)||(49679351-49679424)
chr3 (303-338)||(32577476-32577511)
chr3 (324-358)||(25506612-25506646)
chr3 (297-362)||(31523628-31523694)
chr3 (296-362)||(52859470-52859536)
chr3 (298-363)||(41727030-41727095)
[»] chr5 (21 HSPs)
chr5 (297-365)||(32129707-32129775)
chr5 (296-366)||(13032035-13032105)
chr5 (296-366)||(35660698-35660768)
chr5 (296-362)||(39902335-39902401)
chr5 (297-366)||(4895825-4895894)
chr5 (296-365)||(11775709-11775778)
chr5 (296-371)||(37266642-37266717)
chr5 (299-366)||(14349720-14349787)
chr5 (296-366)||(18625510-18625580)
chr5 (296-365)||(1475727-1475796)
chr5 (296-365)||(40753251-40753320)
chr5 (297-357)||(4592726-4592785)
chr5 (296-366)||(8441060-8441130)
chr5 (296-338)||(43309062-43309104)
chr5 (297-365)||(23253710-23253778)
chr5 (303-365)||(34827111-34827172)
chr5 (299-365)||(38283828-38283894)
chr5 (303-363)||(10173867-10173927)
chr5 (47-85)||(7317794-7317832)
chr5 (303-360)||(25256127-25256184)
chr5 (303-360)||(25319916-25319973)
[»] scaffold0012 (1 HSPs)
scaffold0012 (296-365)||(207980-208049)
[»] chr2 (20 HSPs)
chr2 (296-365)||(28564808-28564877)
chr2 (299-365)||(41983431-41983497)
chr2 (296-371)||(13238592-13238667)
chr2 (296-365)||(35316742-35316811)
chr2 (296-358)||(39465699-39465761)
chr2 (297-365)||(10877619-10877686)
chr2 (296-363)||(2061296-2061363)
chr2 (296-341)||(45625151-45625196)
chr2 (298-366)||(8988782-8988850)
chr2 (298-357)||(29188588-29188647)
chr2 (300-354)||(42075456-42075510)
chr2 (297-365)||(375042-375111)
chr2 (296-360)||(374527-374591)
chr2 (298-366)||(374919-374987)
chr2 (296-348)||(23259576-23259628)
chr2 (296-363)||(12949389-12949456)
chr2 (298-357)||(23459927-23459986)
chr2 (298-348)||(3354844-3354894)
chr2 (328-365)||(673185-673222)
chr2 (301-373)||(3594786-3594859)
[»] scaffold0035 (1 HSPs)
scaffold0035 (296-365)||(16486-16555)
[»] scaffold0250 (1 HSPs)
scaffold0250 (296-365)||(7064-7133)
[»] scaffold0006 (1 HSPs)
scaffold0006 (296-354)||(73929-73987)
[»] scaffold0456 (1 HSPs)
scaffold0456 (296-337)||(13641-13682)
[»] scaffold0008 (1 HSPs)
scaffold0008 (296-360)||(9287-9351)
[»] scaffold0171 (1 HSPs)
scaffold0171 (298-366)||(17387-17455)
[»] scaffold0009 (1 HSPs)
scaffold0009 (296-331)||(6524-6559)
[»] scaffold0126 (1 HSPs)
scaffold0126 (296-361)||(22531-22596)


Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 366 - 705
Target Start/End: Original strand, 45820733 - 45821072
Alignment:
Q  366 gaaaaataggggatagttgataaaccatttaataatatgaatttgtaccgaatagtggataagttaactcgatgaatttaaaatgtttgataaagttgac 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  45820733 gaaaaataggggatagttgataaaccatttaataatatgaatttgtatcgaatagtggataagttaactcgatgaatttaatatgtttgataaagttgac 45820832  T
Q  466 gatttaactagttaataaatataaaacgacacaacaacgtgacttttaattaatatttaacatttctcaataaatatataacttggataatgtttcatag 565  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45820833 gatttaactagttaataaatataaaacgacacaacaacgtgacttttaattaatatttaacatttctcaataaatgtataacttggataatgtttcatag 45820932  T
Q  566 ttggtcaattcaaatgattttatcaaatgcttactaaagaaaagatggaagaatcggttgttcattcataacttgtttaaaataaagttgcttattcaga 665  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45820933 ttggtcaagtcaaatgattttataaaatgcttactaaagaaaagatggaagaatcggttgttcattcataacttgtttaaaataaagttgcttattcaga 45821032  T
Q  666 ggtgtcgttatttgcatgacggttccttaaacacatactt 705  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45821033 ggtgtcgttatttgcatgacggttccttaaacacatactt 45821072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 23610628 - 23610559
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23610628 gattttatgtatctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcttaaccc 23610559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 294 - 367
Target Start/End: Original strand, 33247215 - 33247288
Alignment:
Q  294 tcgattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccga 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||    
T  33247215 tcgattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaacccga 33247288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 12153157 - 12153088
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  12153157 gattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaaccc 12153088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 297 - 365
Target Start/End: Original strand, 5763252 - 5763320
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||    
T  5763252 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagatgatcctaaccc 5763320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 297 - 365
Target Start/End: Original strand, 19902008 - 19902076
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  19902008 attttatgtgtctttatctctccaaattgaagaaatagagaaacacataaatggagaggatcttaaccc 19902076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 56558264 - 56558196
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||    
T  56558264 attttatgtgtctttatctctccaaattgaagaaatagagaaacatataaatggagaggatcctaaccc 56558196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 296 - 366
Target Start/End: Original strand, 5416556 - 5416626
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccg 366  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||  |||||||    
T  5416556 gattttatgtgtctttatctgtccaaattgaagaaatggagaaacacataaattgagaggattctaacccg 5416626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 12241497 - 12241566
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||| ||||||    
T  12241497 gattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatgaagaggatcctaaccc 12241566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 52018769 - 52018700
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  52018769 gattttatgtgtttttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaaccc 52018700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 297 - 365
Target Start/End: Original strand, 47922165 - 47922233
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||    
T  47922165 attttacgtgtctttatctctctaaattgaagaaatggagaaacacataaattgagaggatcctaaccc 47922233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 38079809 - 38079875
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaa 362  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  |||||| |||||||||||||    
T  38079809 gattttatgtgtctttatctctccaaattgaaaaaatggagaaacgcataaatggagaggatcttaa 38079875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 17080729 - 17080798
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||| ||||| ||||||    
T  17080729 gattttatctgtctttatctctccaaattgaagaaatggagaaacacataaatggaggggatcctaaccc 17080798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 18207129 - 18207198
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||| ||||||    
T  18207129 gattttatgtgtctttatctttccaaattgaagaaattgagaaacacataaatggagaggatcctaaccc 18207198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 34778407 - 34778346
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggat 357  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||    
T  34778407 gattttatgtgtctttatctctccacattgaagaaatggagaaacacataaatggagaggat 34778346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 3952259 - 3952314
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattga 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  3952259 gattttatgtgtctttatctctccaaattgaagaaatggagaaacacataatttga 3952314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 296 - 375
Target Start/End: Complemental strand, 24073603 - 24073524
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccgaaaaatagg 375  Q
    ||||||||||| ||| |||||||||||| |||||||| |||||||| |||||| ||||||||||| |||| |||||||||    
T  24073603 gattttatgtgccttcatctctccaaatggaagaaattgagaaacacataaatggagaggatcttcacccaaaaaatagg 24073524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 12312593 - 12312650
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagag 354  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||    
T  12312593 attttatgtgtctttatctctctaaattgaagaaatggagaaacacataaatggagag 12312650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 39862503 - 39862434
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| ||||||  |||||||| ||||||    
T  39862503 gattttatgtgtctttatctctccaaattgaagaaaatgagaaacacataaatgaagaggatcctaaccc 39862434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 33262642 - 33262699
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagag 354  Q
    |||||||||||||||||||||||||||||||||||| || ||| | |||||| |||||    
T  33262642 attttatgtgtctttatctctccaaattgaagaaatagaaaaatacataaatggagag 33262699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 25442271 - 25442331
Alignment:
Q  303 tgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaac 363  Q
    ||||||||||||||||||||| ||||||||||||||    |||||| ||||||||||||||    
T  25442271 tgtgtctttatctctccaaatggaagaaatggagaaggccataaatggagaggatcttaac 25442331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 37002332 - 37002391
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggat 357  Q
    ||||||||||||||||||||| |||| ||| |||||||||||  ||||||| ||||||||    
T  37002332 ttttatgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggat 37002391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 56269158 - 56269217
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggat 357  Q
    ||||||||||||||||||||| |||| ||| |||||||||||  ||||||| ||||||||    
T  56269158 ttttatgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggat 56269217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 366
Target Start/End: Complemental strand, 5524441 - 5524373
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccg 366  Q
    ||||||||||||||||||||| |||| ||| ||||||| |||  ||||||| |||||||| || |||||    
T  5524441 ttttatgtgtctttatctctctaaatggaacaaatggaaaaatttataaatggagaggatattgacccg 5524373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 31862310 - 31862370
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggat 357  Q
    ||||| ||||||| ||||||||||||| | |||||| |||||  |||||||||||||||||    
T  31862310 attttgtgtgtctatatctctccaaatggtagaaatagagaaggatataaattgagaggat 31862370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 36688214 - 36688145
Alignment:
Q  297 attttatgtgtctttatctctccaaattg-aagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    ||||| ||||||| | ||||||||||||| || |||||||||||  ||||||| ||||||||||| ||||    
T  36688214 attttttgtgtctatctctctccaaattgcaacaaatggagaaatttataaatggagaggatcttgaccc 36688145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 37002277 - 37002208
Alignment:
Q  297 attttatgtgtctttatctctccaaattg-aagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    ||||| ||||||| | ||| ||||||||| || |||||||||||  ||||||| ||||||||||||||||    
T  37002277 attttttgtgtctatctctttccaaattgcaataaatggagaaatttataaatggagaggatcttaaccc 37002208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 46654368 - 46654652
Alignment:
Q  12 agcagagatggtgagggattgtagttttcatgaacaacaaagacacggtggcggtggatcacgacagagtgattttcattcacggtggcgcttaagctgc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| |||||||||||||||||    
T  46654368 agcagagatggtgagggattgtagttttcatgaacaacaaagacacagtggtggtggatcacggcagagtgattttcattcatggtggcgcttaagctgc 46654467  T
Q  112 gcaacggaagccgaaaatgtgagagggagaagaagaagggtgtacgattgagaaaaggggaacaatgatatgtttgttttaannnnnnnaatctcgaaca 211  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||||||     
T  46654468 gcaacggaagccgaaaatgtgggagggagaagaagaagggtgtacgattgagaaaaggggaacaatgaaatgtttgttttaatttttttaatctcgaacg 46654567  T
Q  212 ttgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggaggaatt-agtattggagcatatctggactc 295  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||||||    
T  46654568 ttgattttttacatgccacttatcacacatccaaccaagggaatggaaaactggaggaattaagtactggagcagatctggactc 46654652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 45260516 - 45260594
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagagg-atcttaacccgaaaaata 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| |||||| |||||||    
T  45260516 gattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatagagaggaatcctaaccccaaaaata 45260594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 21151138 - 21151069
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||| ||||||    
T  21151138 gattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagagaatcctaaccc 21151069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 7362554 - 7362497
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgaga 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  7362554 gattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggaga 7362497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 9559143 - 9559201
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagag 354  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||    
T  9559143 gattttatgtgtctttatctctccaaatggaagaaatcgagaaacatataaatggagag 9559201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 12139312 - 12139245
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    ||||||||||||  |||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  12139312 gattttatgtgt--ttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaaccc 12139245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 296 - 360
Target Start/End: Complemental strand, 4888453 - 4888389
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatctt 360  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| ||||||  ||||||||||    
T  4888453 gattttatgtgtctttatctctccaaatggaagaaattgagaaacacataaatgaagaggatctt 4888389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 297 - 365
Target Start/End: Original strand, 25084818 - 25084886
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    ||||||||||||||||||||| |||||| || ||||||||||||| |||||| ||||||||| ||||||    
T  25084818 attttatgtgtctttatctcttcaaattaaaaaaatggagaaacacataaatggagaggatcataaccc 25084886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 44647948 - 44647882
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||||   |||||||||||||||||||||| |||||| ||||||||| ||||||    
T  44647948 gattttatgtgtctttatctc---aaattgaagaaatggagaaacacataaatggagaggatcataaccc 44647882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 47226163 - 47226229
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaac 363  Q
    |||||||||||| |||||||||||||||||||||||| |||||||| |||||| ||||||||| ||||    
T  47226163 gattttatgtgt-tttatctctccaaattgaagaaatagagaaacacataaatggagaggatcctaac 47226229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 296 - 358
Target Start/End: Complemental strand, 16366504 - 16366442
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatc 358  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| |||||| |||| ||||    
T  16366504 gattttacgtgtttttatctctccaaattgaagaaatggagaaacacataaatggagatgatc 16366442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 296 - 358
Target Start/End: Complemental strand, 18198242 - 18198180
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatc 358  Q
    |||||||||||  ||||||||| ||||||||||||||||||||||| |||||| |||||||||    
T  18198242 gattttatgtgattttatctctacaaattgaagaaatggagaaacacataaatggagaggatc 18198180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 6882149 - 6882214
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaac 363  Q
    |||||||||||||||||||| ||||| ||| |||||||||||  ||||||||||||||||| ||||    
T  6882149 ttttatgtgtctttatctcttcaaatggaacaaatggagaaagttataaattgagaggatcctaac 6882214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 29631033 - 29630967
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaac 363  Q
    ||||||||||||||||| |||||||||  |||||||||||||| | || ||| ||||||||||||||    
T  29631033 attttatgtgtctttatatctccaaatgaaagaaatggagaaagacatgaatggagaggatcttaac 29630967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 298 - 370
Target Start/End: Original strand, 19889115 - 19889187
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccgaaaa 370  Q
    ||||||||||||||||||||| |||| ||| |||||||||||  |||| || |||||||| || |||||||||    
T  19889115 ttttatgtgtctttatctctctaaatggaataaatggagaaatttatagatggagaggatatttacccgaaaa 19889187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 32915943 - 32915880
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatctta 361  Q
    |||| ||||||||||||||||||||| ||||||||||||||  | |||||| | ||||||||||    
T  32915943 ttttttgtgtctttatctctccaaatggaagaaatggagaagaacataaatggggaggatctta 32915880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 210 - 273
Target Start/End: Complemental strand, 46653970 - 46653907
Alignment:
Q  210 cattgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggaggaatta 273  Q
    ||||| ||||||||||||||||||||| ||||||||  | |||| |||||||| ||||||||||    
T  46653970 cattggttttttacatgccacttgtcatacatccaagtaggggactgggaaacaggaggaatta 46653907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 8608020 - 8607960
Alignment:
Q  303 tgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaac 363  Q
    ||||||| ||||| ||||||| ||| |||||||||||  ||||||| ||||||||||||||    
T  8608020 tgtgtctctatctttccaaatggaacaaatggagaaagttataaatggagaggatcttaac 8607960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 17037957 - 17038025
Alignment:
Q  201 aatctcgaacattgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggagga 269  Q
    |||||| | |||||||||| ||  |||||||||||| ||||| || ||||||| |||||||||||||||    
T  17037957 aatctcaaccattgattttgtatgtgccacttgtcatacatctaagcaagggattgggaaactggagga 17038025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 32916163 - 32916104
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggat 357  Q
    |||| ||||| |||||||||| |||| |||||||||||||||  ||||||| ||||||||    
T  32916163 ttttgtgtgtatttatctctcaaaatggaagaaatggagaaagttataaatggagaggat 32916104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 17037543 - 17037505
Alignment:
Q  47 aacaaagacacggtggcggtggatcacgacagagtgatt 85  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  17037543 aacaaagacacggtggcggcggatcacggcagagtgatt 17037505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 47271205 - 47271263
Alignment:
Q  305 tgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaac 363  Q
    |||||||||||||||||||||||||| | |||||| | | ||||  |||||||||||||    
T  47271205 tgtctttatctctccaaattgaagaattagagaaagagacaaatgaagaggatcttaac 47271263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 3982 - 4266
Alignment:
Q  12 agcagagatggtgagggattgtagttttcatgaacaacaaagacacggtggcggtggatcacgacagagtgattttcattcacggtggcgcttaagctgc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  3982 agcagagatggtgagggattgtagttttcatgaacaacaaagacacagtggtggtggatcacgacagagtgattttcattcacgctggcgcttaagctgc 4081  T
Q  112 gcaacggaagccgaaaatgtgagagggagaagaagaagggtgtacgattgagaaaaggggaacaatgatatgtttgttttaannnnnnnaatctcgaaca 211  Q
    |||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||| ||     
T  4082 gcaacggaagccgaaaacatgggagggagaagaagaagggtgtacgattgagaaaaggggaacaatgaaatgtttgttttaatttttttaatctcggacg 4181  T
Q  212 ttgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggaggaatt-agtattggagcatatctggactc 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||| ||||||||||||| ||||    
T  4182 ttgattttttacatgccacttgtcacacatccaaccaagggaatgggaaaatggagaaattaagtactggagcatatctgaactc 4266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 201 - 296
Target Start/End: Complemental strand, 3593 - 3497
Alignment:
Q  201 aatctcgaacattgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggaggaatt-agtattggagcatatctggactcg 296  Q
    |||||| | ||||| ||||||||||||||||||||| |||||||| ||| ||| |||||||| ||||||||| |||| ||||| | |||||||||||    
T  3593 aatctcaaccattggttttttacatgccacttgtcatacatccaagcaatggactgggaaacaggaggaattaagtactggaggagatctggactcg 3497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 48167206 - 48167487
Alignment:
Q  16 gagatggtgagggattgtagttttcatgaacaacaaagacacggtggcggtggatcacgacagagtgattttcattcacggtggcgcttaagctgcgcaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||| |||||||||||||||||||||    
T  48167206 gagatggtgagggattgtagttttcatgaacaacaaagacacggtggtggtggatcacggcggagtgattttcattcatggtggcgcttaagctgcgcaa 48167305  T
Q  116 cggaagccgaaaatgtgagagggagaagaagaagggtgtacgattgagaaaaggggaacaatgatatgtttgttttaannnnnnnaatctcgaacattga 215  Q
     |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       |||||||||| ||||    
T  48167306 gggaagccgaaaatgtgggagggagaagaagaagggtgtacgattgagaaaaggggaacaatgaaatgtttgttttaatttttttaatctcgaacgttga 48167405  T
Q  216 ttttttacatgccacttgtcacacatccaaccaagggaatgggaaactggaggaatt-agtattggagcatatctggactcg 296  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||| ||||||| |||||||||||    
T  48167406 ttttttacatgccacttgtcacacatccaaccaaaggaataggaaaatggaggaattaagtactggagcagatctggactcg 48167487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 12380999 - 12381077
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccgaaaaatag 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||| ||||||    
T  12380999 gattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaacccgataaatag 12381077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 12385066 - 12385144
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccgaaaaatag 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||| ||||||    
T  12385066 gattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaacccgataaatag 12385144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 45978008 - 45977939
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  45978008 gattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaaccc 45977939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 50484372 - 50484303
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  50484372 gattttatgtgtctttatctctccaaattaaagaaatggagaaacacataaatggagaggatcttaaccc 50484303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 7841799 - 7841868
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||    
T  7841799 gattttatgtgtctttatctctccaaattgaagaaatggaaaaacatataaatggagagaatcctaaccc 7841868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 12151753 - 12151684
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||| | ||||||||||||||    
T  12151753 gattttatgtgtctttatctctccaaattgaataaatggagaaacacataaatggggaggatcttaaccc 12151684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 48166803 - 48166718
Alignment:
Q  210 cattgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggaggaatt-agtattggagcatatctggact 294  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||||| |||| ||||| | |||||||||    
T  48166803 cattggttttttacatgccacttgtcatacatccaagcaagggactgggaaacaggaggaattaagtactggaggagatctggact 48166718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 40328263 - 40328193
Alignment:
Q  296 gattttatgtgtcttt-atctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||| ||||||||||||| |||||||| ||||||| ||||||  |||||||||||||||    
T  40328263 gattttatgtgtcttttatctctccaaattaaagaaatgaagaaacacataaatgaagaggatcttaaccc 40328193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 50294152 - 50294216
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatctt 360  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||  ||||| |||||| ||||    
T  50294152 gattttatgtgtctttatctctccaaatggaagaaattgagaaacacgtaaatggagagggtctt 50294216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 23862045 - 23862090
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 341  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||    
T  23862045 gattttatgtgtctttatctttccaaattgaagaaatagagaaaca 23862090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 48327243 - 48327312
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    ||||||||||  |||||| ||||||||| |||||||| || ||||| |||||| ||||||||||||||||    
T  48327243 gattttatgtacctttatatctccaaatggaagaaattgataaacacataaatggagaggatcttaaccc 48327312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 34153768 - 34153825
Alignment:
Q  212 ttgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggagga 269  Q
    |||||||| || ||||||||||||| ||||| || ||||||| |||||||||||||||    
T  34153768 ttgattttgtatatgccacttgtcatacatctaagcaagggattgggaaactggagga 34153825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 40988700 - 40988643
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagag 354  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||  ||||||| |||||    
T  40988700 attttgtgtgtctttatctctccaaatagaaaaaatggagaaagttataaatggagag 40988643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 297 - 360
Target Start/End: Complemental strand, 2845251 - 2845187
Alignment:
Q  297 attttatgtgtctttatctctccaaattga-agaaatggagaaacatataaattgagaggatctt 360  Q
    ||||| ||||| |||||||||||||||||| |||||| |||||| | |||||| |||||||||||    
T  2845251 attttgtgtgtatttatctctccaaattgatagaaatagagaaaaacataaatggagaggatctt 2845187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 5047471 - 5047536
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaac 363  Q
    |||| |||| ||||||||||| |||| ||||||||||||| |   |||||| ||||||||||||||    
T  5047471 ttttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaac 5047536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 34153096 - 34153035
Alignment:
Q  210 cattgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggaggaat 271  Q
    |||||||| ||| |||||||| ||||||| ||| || ||||||| |||||||||||| ||||    
T  34153096 cattgattatttccatgccacgtgtcacatatctaagcaagggactgggaaactggaagaat 34153035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 8e-29; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 297 - 374
Target Start/End: Complemental strand, 4804433 - 4804356
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccgaaaaatag 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  4804433 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcctaaccccaaaaatag 4804356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 32737859 - 32737791
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  32737859 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcctaaccc 32737791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 1249235 - 1249304
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  1249235 gattttatgtgtctttatctttccaaattgaagaaatggagaaacacataaatggagaggatcttaaccc 1249304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 7162070 - 7162001
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||| ||||||    
T  7162070 gattttatgtgtctttatctctccaaattgaagaaatggagaaacacgtaaatagagaggatcctaaccc 7162001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 29698149 - 29698080
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  29698149 gattttatgtgtctttatttctccaaattgaagaaatggagaaacacataaatggagaggatcctaaccc 29698080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 298 - 370
Target Start/End: Complemental strand, 27826522 - 27826450
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccgaaaa 370  Q
    ||||||||||||||||||||| |||| |||||||| |||||||| |||||| ||||||||||| |||| ||||    
T  27826522 ttttatgtgtctttatctctcaaaatggaagaaattgagaaacacataaatggagaggatcttcaccccaaaa 27826450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 296 - 341
Target Start/End: Complemental strand, 17944148 - 17944103
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 341  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  17944148 gattttatgtgtttttatctctccaaattgaagaaatggagaaaca 17944103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 21159458 - 21159497
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatgga 335  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  21159458 gattttatgtgtctttatatctccaaattgaagaaatgga 21159497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 30460806 - 30460763
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaa 339  Q
    |||||||||||||||||||||||||||| ||||||||| |||||    
T  30460806 gattttatgtgtctttatctctccaaatagaagaaatgaagaaa 30460763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 12412622 - 12412582
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggaga 337  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  12412622 attttatgtatttttatctctccaaattgaagaaatggaga 12412582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 227660 - 227714
Alignment:
Q  303 tgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggat 357  Q
    ||||||| ||||||||||||||| |||||||||||| || ||||||  |||||||    
T  227660 tgtgtctatatctctccaaattgtagaaatggagaagcacataaatgaagaggat 227714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 2142319 - 2142250
Alignment:
Q  297 attttatgtgtctttatctctccaaattg-aagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    ||||| ||||||| | ||||||||||||| || ||||||| |||  ||||||| ||||||||||||||||    
T  2142319 attttttgtgtctatctctctccaaattgcaacaaatggaaaaatttataaatggagaggatcttaaccc 2142250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 17398783 - 17398824
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggaga 337  Q
    |||||||||||||||||||||||||||| || |||| |||||    
T  17398783 gattttatgtgtctttatctctccaaatggaggaaagggaga 17398824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 5033091 - 5033023
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5033091 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcttaaccc 5033023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 30426758 - 30426827
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| ||||||    
T  30426758 gattttatgtgtctttatctctccaaattgaagaaatggaaaaacacataaatggagaggatcctaaccc 30426827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 36991342 - 36991273
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||  |||||||| ||||||    
T  36991342 gattttacgtgtctttatctctccaaattgaagaaatggagaaacacataaatgaagaggatcctaaccc 36991273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 41511248 - 41511179
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||| |||||| ||||||||| ||||||    
T  41511248 gattttatgtgtttttatctctccaaattgaagaaatggaaaaacacataaatggagaggatcctaaccc 41511179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 297 - 365
Target Start/End: Original strand, 10652709 - 10652776
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  10652709 attttatgtgt-tttatctctccaaattgaagaaatgaagaaacacataaatggagaggatcttaaccc 10652776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 28069705 - 28069636
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||||||||||| |||||||| || ||||| |||||| ||||||||||| ||||    
T  28069705 gattttatgtgtctttatctctccaaatggaagaaattgaaaaacacataaatggagaggatcttcaccc 28069636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 297 - 366
Target Start/End: Original strand, 28318992 - 28319061
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccg 366  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  ||||| ||||  ||| |||||||    
T  28318992 attttatgtgtctttgtctctccaaattgaagaaatggagaaacacgtaaatggagaaaatcctaacccg 28319061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 12177653 - 12177722
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||  |||| ||||||||  |||||||||||||||||||||| |||||| ||||||||| ||||||    
T  12177653 gattttaattgtccttatctctttaaattgaagaaatggagaaacacataaatagagaggatcctaaccc 12177722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 12422081 - 12422150
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||  |||| ||||||||  |||||||||||||||||||||| |||||| ||||||||| ||||||    
T  12422081 gattttaattgtccttatctctttaaattgaagaaatggagaaacacataaatagagaggatcctaaccc 12422150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 37966533 - 37966598
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaac 363  Q
    |||||||| |||||||||||||||||  |||||||||||||| | ||||||| ||| |||||||||    
T  37966533 ttttatgtatctttatctctccaaataaaagaaatggagaaagacataaattaagaagatcttaac 37966598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 296 - 364
Target Start/End: Original strand, 40695336 - 40695404
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacc 364  Q
    |||||||||| |||||||| |||||||||||||||||||| ||| | |||||| | ||||||| |||||    
T  40695336 gattttatgtttctttatccctccaaattgaagaaatggataaatacataaatagggaggatcctaacc 40695404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 296 - 358
Target Start/End: Complemental strand, 24102002 - 24101940
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatc 358  Q
    ||||||| ||||||||||||||||||||| || |||| || ||||| |||||| |||||||||    
T  24102002 gattttacgtgtctttatctctccaaattaaaaaaatagaaaaacacataaatggagaggatc 24101940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 10672602 - 10672662
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggat 357  Q
    ||||||||| | ||||||||||||||||||| ||||| ||||||| ||||||  |||||||    
T  10672602 attttatgtatttttatctctccaaattgaataaatgaagaaacacataaatgaagaggat 10672662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 34612557 - 34612498
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggat 357  Q
    ||||||||||||||||||||| |||| ||| ||||||| |||  ||||||| ||||||||    
T  34612557 ttttatgtgtctttatctctctaaatggaacaaatggaaaaatttataaatggagaggat 34612498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 360
Target Start/End: Complemental strand, 44888612 - 44888557
Alignment:
Q  305 tgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatctt 360  Q
    ||||||||||||||||||| ||| ||||||||| |  ||||||| |||||||||||    
T  44888612 tgtctttatctctccaaatagaaaaaatggagacaattataaatggagaggatctt 44888557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 21492767 - 21492730
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatgga 335  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  21492767 ttttgtgtgtctttatctctccaaatggaagaaatgga 21492730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 297 - 366
Target Start/End: Complemental strand, 45113255 - 45113186
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccg 366  Q
    ||||||||||||| ||||||||||||| | | ||||| ||||  |||||||| |||||||| || |||||    
T  45113255 attttatgtgtctatatctctccaaatggtaaaaatgaagaaggatataaatggagaggattttgacccg 45113186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 1253201 - 1253320
Alignment:
Q  12 agcagagatggtgagggattgtag---ttttcatgaacaacaaagacacggtggcggtggatcacgacagagtgattttcattcacggtggcgcttaagc 108  Q
    ||||| ||||||||||| ||||||   |||||||||||||||||||||| |||| ||||||| ||| | |||||||||||||||||| ||||||||||||    
T  1253201 agcagggatggtgagggcttgtagtagttttcatgaacaacaaagacacagtggtggtggatgacggcggagtgattttcattcacgatggcgcttaagc 1253300  T
Q  109 tgcgcaacggaagccgaaaa 128  Q
    ||| ||| |||||| |||||    
T  1253301 tgcacaagggaagcagaaaa 1253320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 296 - 366
Target Start/End: Original strand, 43720036 - 43720106
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| |||||||    
T  43720036 gattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaagatcctaacccg 43720106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 40851759 - 40851690
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| ||||||    
T  40851759 gattttatgtgtctttatctctccaaattgaagaaatggagaaatacataaatggagaggatcctaaccc 40851690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 19830521 - 19830591
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatat-aaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||    
T  19830521 gattttatgtgtctttatctctccaaattgaagaaatggaaaaacacataaaatggagaggatcttaaccc 19830591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 550906 - 550972
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaac 363  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| | |||||| ||||||||||||||    
T  550906 attttatgtatctttatctctccaaatggaagaaatggagaaagacataaatggagaggatcttaac 550972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 297 - 366
Target Start/End: Complemental strand, 2229968 - 2229899
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccg 366  Q
    |||||||||||||||||||||||||||| ||||||| |||||||| ||||||  |||||||| |||||||    
T  2229968 attttatgtgtctttatctctccaaattaaagaaatagagaaacacataaatgaagaggatcctaacccg 2229899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 296 - 341
Target Start/End: Complemental strand, 27033637 - 27033592
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  27033637 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 27033592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 296 - 353
Target Start/End: Original strand, 34373674 - 34373731
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgaga 353  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||    
T  34373674 gattttttgtctctttatctctccaaattgaagaaatggagaaacacataaatggaga 34373731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 3009233 - 3009169
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaa 362  Q
    ||||||||||||||||||||| |||| ||| |||||||||||  ||||||| |||||||||||||    
T  3009233 ttttatgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggatcttaa 3009169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 34373817 - 34373750
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaac 363  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||| ||  || ||||||||| ||||    
T  34373817 gattttatgtgtctttatctctccaaattgaaaaaatgaagaaacacattgatggagaggatcctaac 34373750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 297 - 366
Target Start/End: Original strand, 20485808 - 20485877
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccg 366  Q
    ||||||||||| | ||||||||||||| | ||||||||||||| || ||||| |||||||||| ||||||    
T  20485808 attttatgtgtttatatctctccaaatggtagaaatggagaaaaatttaaatggagaggatctcaacccg 20485877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 298 - 366
Target Start/End: Original strand, 31523749 - 31523817
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccg 366  Q
    ||||||||||||||||||||| |||| ||| |||||||||||  ||||||| |||||||| || |||||    
T  31523749 ttttatgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggatattgacccg 31523817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 42613074 - 42613015
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggat 357  Q
    ||||||||||||||||||||| |||| ||| |||||||||||  ||||||| ||||||||    
T  42613074 ttttatgtgtctttatctctctaaatagaacaaatggagaaatttataaatggagaggat 42613015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 12402951 - 12402893
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagag 354  Q
    ||||||||||||||||||||||||||||| |  ||||| ||||||| |||||| |||||    
T  12402951 gattttatgtgtctttatctctccaaattaagaaaatgaagaaacacataaatggagag 12402893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 46167379 - 46167322
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgaga 353  Q
    |||| ||| |||||||||||||| |||||||||||||||| ||||| |||||| ||||    
T  46167379 gattatatttgtctttatctctctaaattgaagaaatggaaaaacacataaatggaga 46167322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 298 - 371
Target Start/End: Original strand, 49679351 - 49679424
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccgaaaaa 371  Q
    ||||||||||||||||||||| ||||  || |||||||||||  ||||||| |||||||| || ||||| ||||    
T  49679351 ttttatgtgtctttatctctctaaatgaaacaaatggagaaatttataaatggagaggatattgacccggaaaa 49679424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 338
Target Start/End: Complemental strand, 32577511 - 32577476
Alignment:
Q  303 tgtgtctttatctctccaaattgaagaaatggagaa 338  Q
    ||||||||||||||||||||| ||||||||||||||    
T  32577511 tgtgtctttatctctccaaatagaagaaatggagaa 32577476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 324 - 358
Target Start/End: Original strand, 25506612 - 25506646
Alignment:
Q  324 tgaagaaatggagaaacatataaattgagaggatc 358  Q
    ||||||||||||||||||||||||| |||||||||    
T  25506612 tgaagaaatggagaaacatataaatggagaggatc 25506646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 31523694 - 31523628
Alignment:
Q  297 attttatgtgtctttatctctccaaattg-aagaaatggagaaacatataaattgagaggatcttaa 362  Q
    ||||| ||||||| | ||||||||||||| || |||||||||||  ||||||| |||||||||||||    
T  31523694 attttttgtgtctatctctctccaaattgcaataaatggagaaatttataaatggagaggatcttaa 31523628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 52859470 - 52859536
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaa 362  Q
    |||||||||||| ||||| ||||||||| | ||||||||||||| | ||||||  |||| |||||||    
T  52859470 gattttatgtgtatttatttctccaaatggtagaaatggagaaagacataaatgaagagaatcttaa 52859536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 41727030 - 41727095
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaac 363  Q
    |||||||||||||| ||| | ||||| |||||||| |||||| | |||||| |||||||| |||||    
T  41727030 ttttatgtgtctttgtcttttcaaatagaagaaatagagaaaaacataaatcgagaggattttaac 41727095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 8e-26; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 297 - 365
Target Start/End: Original strand, 32129707 - 32129775
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  32129707 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcctaaccc 32129775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 13032105 - 13032035
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||    
T  13032105 gattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaacccg 13032035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 296 - 366
Target Start/End: Original strand, 35660698 - 35660768
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccg 366  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||    
T  35660698 gattttatgtgtctttatctctccaaattgaagaaacggagaaacacataaatagagaggatcttaacccg 35660768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 39902401 - 39902335
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaa 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  39902401 gattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcttaa 39902335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 297 - 366
Target Start/End: Original strand, 4895825 - 4895894
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccg 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||    
T  4895825 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatgaagaggatcctaacccg 4895894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 11775778 - 11775709
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  11775778 gattttatgtgtttttatctctccaaattgaagaaatggagaaacacataaatggagaggatcttaaccc 11775709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 296 - 371
Target Start/End: Complemental strand, 37266717 - 37266642
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccgaaaaa 371  Q
    |||||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||||| ||||||| ||||    
T  37266717 gattttatgtgtctttatctctccaaattgaagaaatggaaaaacacgtaaatggagaggatcctaacccgtaaaa 37266642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 299 - 366
Target Start/End: Complemental strand, 14349787 - 14349720
Alignment:
Q  299 tttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccg 366  Q
    ||||||||||||||||| |||||||| |||||||||||||||| |||||| |||| ||||||||||||    
T  14349787 tttatgtgtctttatctttccaaattaaagaaatggagaaacacataaatggagaagatcttaacccg 14349720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 296 - 366
Target Start/End: Original strand, 18625510 - 18625580
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccg 366  Q
    ||||||||||||||||||||||||||||  ||||||| || ||||| |||||| ||||||||||| |||||    
T  18625510 gattttatgtgtctttatctctccaaatgaaagaaattgaaaaacacataaatggagaggatcttcacccg 18625580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 1475727 - 1475796
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    ||||||||||||||||||| |||||||||||||||||| | ||||| ||||||  |||||||| ||||||    
T  1475727 gattttatgtgtctttatcactccaaattgaagaaatgaaaaaacacataaatgaagaggatcctaaccc 1475796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 40753251 - 40753320
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||  |||||||||||||||| ||||||||||||| || |||||| ||||||||| ||||||    
T  40753251 gattttatgtgcttttatctctccaaattaaagaaatggagaagcacataaatggagaggatcctaaccc 40753320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 4592785 - 4592726
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggat 357  Q
    ||||||||||| || |||||||||||||||||||||||||||||| |||||| ||||||||    
T  4592785 attttatgtgtatt-atctctccaaattgaagaaatggagaaacacataaatggagaggat 4592726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 296 - 366
Target Start/End: Original strand, 8441060 - 8441130
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccg 366  Q
    |||| ||||||| |||||||||||||||||| |||| ||||||||| |||||| |||| |||| |||||||    
T  8441060 gattgtatgtgtatttatctctccaaattgatgaaacggagaaacacataaatggagatgatcctaacccg 8441130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 296 - 338
Target Start/End: Complemental strand, 43309104 - 43309062
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaa 338  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  43309104 gattttatgtgtctttatctcttcaaattgaagaaatggagaa 43309062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 23253778 - 23253710
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    ||||||||||||| ||||||||||||| | ||||||||||||| || ||||| || ||||||| |||||    
T  23253778 attttatgtgtctctatctctccaaatggtagaaatggagaaaaatttaaatggataggatctcaaccc 23253710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 303 - 365
Target Start/End: Complemental strand, 34827172 - 34827111
Alignment:
Q  303 tgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||| | ||||||| ||||||    
T  34827172 tgtgtctttatctcttcaaatttaagaaatgga-aaacatataaatggtgaggatcctaaccc 34827111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 299 - 365
Target Start/End: Original strand, 38283828 - 38283894
Alignment:
Q  299 tttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    ||||||||||| ||||||||||||||| | ||||||||||| || |||||  ||||||||| |||||    
T  38283828 tttatgtgtctatatctctccaaattgtaaaaatggagaaaaatttaaatgaagaggatctcaaccc 38283894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 10173927 - 10173867
Alignment:
Q  303 tgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaac 363  Q
    |||||||||||||||||||||  | |||||||||||  | |||||| ||||||||||||||    
T  10173927 tgtgtctttatctctccaaatgaaggaaatggagaaggacataaatggagaggatcttaac 10173867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 7317794 - 7317832
Alignment:
Q  47 aacaaagacacggtggcggtggatcacgacagagtgatt 85  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  7317794 aacaaagacacggtggcggcggatcacggcagagtgatt 7317832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 303 - 360
Target Start/End: Complemental strand, 25256184 - 25256127
Alignment:
Q  303 tgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatctt 360  Q
    ||||| ||||||||| ||||| ||||||||||||| ||  |||||| |||||||||||    
T  25256184 tgtgtttttatctcttcaaatagaagaaatggagagactaataaatagagaggatctt 25256127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 303 - 360
Target Start/End: Complemental strand, 25319973 - 25319916
Alignment:
Q  303 tgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatctt 360  Q
    ||||| ||||||||| ||||| ||||||||||||| ||  |||||| |||||||||||    
T  25319973 tgtgtttttatctcttcaaatagaagaaatggagagactaataaatagagaggatctt 25319916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 208049 - 207980
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  208049 gattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaaccc 207980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 28564877 - 28564808
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||    
T  28564877 gattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcttcaccc 28564808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 299 - 365
Target Start/End: Original strand, 41983431 - 41983497
Alignment:
Q  299 tttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  41983431 tttatgtgtctttatctctccaaattaaagaaatggagaaacacataaatggagaggatcttaaccc 41983497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 296 - 371
Target Start/End: Complemental strand, 13238667 - 13238592
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccgaaaaa 371  Q
    ||||||||||||||||||||||||||||||||||||| |||||||  |||||| ||||||||||| ||||| ||||    
T  13238667 gattttatgtgtctttatctctccaaattgaagaaattgagaaacgcataaatggagaggatcttcacccgtaaaa 13238592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 35316811 - 35316742
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||| |||||||||||||||||||||||||||||||||||||  ||||| ||||||||| ||||||    
T  35316811 gattttatatgtctttatctctccaaattgaagaaatggagaaacacgtaaatggagaggatcctaaccc 35316742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 296 - 358
Target Start/End: Complemental strand, 39465761 - 39465699
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatc 358  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||| |||||| |||||||||    
T  39465761 gattttatgtgtttttatctctccaaattgaaaaaatggagaaacacataaatggagaggatc 39465699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 10877686 - 10877619
Alignment:
Q  297 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||  |||||||| ||||||    
T  10877686 attttatgtgt-tttatctctccaaattgaagaaatggagaaacacataaatgaagaggatcctaaccc 10877619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 2061363 - 2061296
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaac 363  Q
    ||||||||| |||||||||||||||||| |||||||| |||| ||  |||||| ||||||||||||||    
T  2061363 gattttatgcgtctttatctctccaaatggaagaaattgagatactaataaatggagaggatcttaac 2061296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 45625151 - 45625196
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 341  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||    
T  45625151 gattttacgtgtctttatctctctaaattgaagaaatggagaaaca 45625196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 298 - 366
Target Start/End: Complemental strand, 8988850 - 8988782
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccg 366  Q
    ||||||||||||||||||||| |||| ||| |||||||||||  ||||||| |||||||| || |||||    
T  8988850 ttttatgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggatattgacccg 8988782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 29188647 - 29188588
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggat 357  Q
    ||||||||||||||||||||| |||| ||| |||||||||||  ||||||| ||||||||    
T  29188647 ttttatgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggat 29188588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 300 - 354
Target Start/End: Original strand, 42075456 - 42075510
Alignment:
Q  300 ttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagag 354  Q
    |||||||||||||||||||||||| ||||||||||| ||||  |||||| |||||    
T  42075456 ttatgtgtctttatctctccaaatggaagaaatggataaactaataaatggagag 42075510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 297 - 365
Target Start/End: Original strand, 375042 - 375111
Alignment:
Q  297 attttatgtgtctttatctctccaaattg-aagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    ||||| ||||||| | ||||||||||||| || |||||||||||  ||||||| ||||||||||||||||    
T  375042 attttttgtgtctatctctctccaaattgcaacaaatggagaaatttataaatggagaggatcttaaccc 375111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 374527 - 374591
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatctt 360  Q
    |||||||||||| |||||||||| ||||  |||||| ||||||||| |||||| ||||| |||||    
T  374527 gattttatgtgtttttatctctctaaatgaaagaaagggagaaacacataaatggagagaatctt 374591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 366
Target Start/End: Complemental strand, 374987 - 374919
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccg 366  Q
    ||||||||||||||||||||| |||| ||| |||||||||||  ||||||| |||| ||| || |||||    
T  374987 ttttatgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaagatattgacccg 374919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 23259576 - 23259628
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaat 348  Q
    |||||||| |||||||||| ||| |||||||||||||| |||||| |||||||    
T  23259576 gattttatatgtctttatccctcaaaattgaagaaatgaagaaacgtataaat 23259628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 12949456 - 12949389
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaac 363  Q
    |||||||||| ||||||||||||||||| | ||||| ||||||| | ||| || |||| |||||||||    
T  12949456 gattttatgtatctttatctctccaaataggagaaacggagaaagacatagatggagaagatcttaac 12949389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 23459927 - 23459986
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggat 357  Q
    |||||||||||||||||||||  ||| ||| |||||||||||  ||||||| ||||||||    
T  23459927 ttttatgtgtctttatctctctgaatggaacaaatggagaaatttataaatggagaggat 23459986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 3354844 - 3354894
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaat 348  Q
    ||||||||||||||||||||| |||| ||| |||||||||||  |||||||    
T  3354844 ttttatgtgtctttatctctctaaatagaacaaatggagaaatttataaat 3354894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 673222 - 673185
Alignment:
Q  328 gaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  673222 gaaatggagaaacacataaatggagaggatcttaaccc 673185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 373
Target Start/End: Complemental strand, 3594859 - 3594786
Alignment:
Q  301 tatgtgtctttatctctccaaattg-aagaaatggagaaacatataaattgagaggatcttaacccgaaaaata 373  Q
    ||||||||| | ||||||||||||| || ||||| | |||  ||||||| ||||||||||| ||||||||||||    
T  3594859 tatgtgtctatctctctccaaattgcaacaaatgaaaaaagttataaatggagaggatcttgacccgaaaaata 3594786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 16486 - 16555
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    ||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  16486 gattttatgtaattttatctctccaaattgaagaaatggagaaacacataaattgagaggatcctaaccc 16555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 7133 - 7064
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaaccc 365  Q
    |||||||| ||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||| ||||||    
T  7133 gattttatatgtctttatctctgcaaattgaagaaatgaagaaacacataaatggagaggatcctaaccc 7064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 73929 - 73987
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagag 354  Q
    |||||||||||| |||||||||| |||||||||||||||||||||| |||||| |||||    
T  73929 gattttatgtgtttttatctctctaaattgaagaaatggagaaacacataaatggagag 73987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 13682 - 13641
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggaga 337  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13682 gattttatgtgtctttatctctccaaattgaagaaatggaga 13641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 9287 - 9351
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatctt 360  Q
    ||||| ||||| |||||||||||||||| |||||||| |||||||| |||||| |||||||||||    
T  9287 gatttcatgtgcctttatctctccaaatggaagaaattgagaaacacataaatggagaggatctt 9351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 366
Target Start/End: Original strand, 17387 - 17455
Alignment:
Q  298 ttttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatcttaacccg 366  Q
    ||||||||||||||||||||| |||| ||| ||||| |||||  ||||||| |||||||| || |||||    
T  17387 ttttatgtgtctttatctctctaaatggaacaaatgaagaaatttataaatggagaggatattgacccg 17455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 296 - 331
Target Start/End: Original strand, 6524 - 6559
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaa 331  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6524 gattttatgtgtctttatctctcaaaattgaagaaa 6559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 22531 - 22596
Alignment:
Q  296 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaattgagaggatctta 361  Q
    |||||||||||| |||||||||| ||||  |||||||||||| | | |||||| |||| |||||||    
T  22531 gattttatgtgtatttatctctctaaatgtaagaaatggagatagacataaatggagaagatctta 22596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University