View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7813_low_5 (Length: 232)
Name: NF7813_low_5
Description: NF7813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7813_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 53711967 - 53712039
Alignment:
| Q |
18 |
cgccaaggacagtaggtctactacgatattcatttccccatatagaacaccacatttcttagacacatcaaca |
90 |
Q |
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| T |
53711967 |
cgccaaggacagtaggtctactacgatattcatttccccatatagaacaccacatttcttagacacatcaaca |
53712039 |
T |
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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 53712104 - 53712163
Alignment:
| Q |
155 |
ctcacttcccactaagattattctttgttagtcattacgaataagatatcaagacaaaga |
214 |
Q |
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| T |
53712104 |
ctcacttcccactaagattattctttgttagtcattacgaataagatatcaagacaaaga |
53712163 |
T |
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