View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7814_high_2 (Length: 817)

Name: NF7814_high_2
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7814_high_2
NF7814_high_2
[»] chr6 (6 HSPs)
chr6 (1-439)||(5921408-5921846)
chr6 (506-709)||(5921913-5922116)
chr6 (139-373)||(26967837-26968071)
chr6 (753-803)||(5922332-5922382)
chr6 (163-211)||(16733009-16733057)
chr6 (139-277)||(14813143-14813281)
[»] chr5 (3 HSPs)
chr5 (1-436)||(20325710-20326145)
chr5 (505-725)||(20326168-20326387)
chr5 (132-210)||(29125294-29125372)
[»] chr8 (2 HSPs)
chr8 (669-730)||(36164903-36164964)
chr8 (165-208)||(188136-188179)
[»] chr1 (2 HSPs)
chr1 (33-205)||(52776100-52776272)
chr1 (139-208)||(2358144-2358213)
[»] chr3 (3 HSPs)
chr3 (139-205)||(19588505-19588571)
chr3 (33-205)||(12283720-12283892)
chr3 (165-307)||(34503758-34503900)
[»] scaffold0329 (1 HSPs)
scaffold0329 (33-205)||(9429-9601)
[»] chr4 (3 HSPs)
chr4 (33-205)||(22178630-22178802)
chr4 (165-208)||(10636536-10636579)
chr4 (139-277)||(5237685-5237823)
[»] chr2 (2 HSPs)
chr2 (69-205)||(29497877-29498013)
chr2 (141-210)||(8309856-8309925)


Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 5921408 - 5921846
Alignment:
Q  1 actcaagaacatattttgcaccttgtttcaaattgttaatagaggaacgcaaatttgtaatacgaatgcgatcaaccttagagaaactttcatggagatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||    
T  5921408 actcaagaacatattttgcaccttgtttcaaattgttaatagaagaacgcaaatttgcaatacaaatgcgatcaaccttagagatacgttcatggagatc 5921507  T
Q  101 ttgccatacctcatatgcaatgacaaagaagacaacaatttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgt 200  Q
    ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |    
T  5921508 ttgccatacctcataagcaatgacatagaagacaacagtttgagcaatagaatttgaaacggaattgatgagccaagattgaaccaaatggttgcaacat 5921607  T
Q  201 tcccatgcagaccggttaagatcatcaagatcaggttgttcaatggagccattggtgaatccaagcttgttcttcgtgcctagagaacgcttcatggaac 300  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5921608 tcccatgcagaccggttaagatcatcaagattgggttgttcaatggagccattgatgaatccaagcttgttcttcgtgcctagagaacgcttcatggaac 5921707  T
Q  301 gattccaagctagataactggaaccatcaagcttaggagaaacgattaaagatgaaggaccttcacttggatgcacgtaaaatggagattcttgatcagg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  5921708 gattccaagctagataactggaaccatcaagcttaggagaaacaattaaagatgaaggaccttcacttggattcacgtgaaatggagattcttgatcagg 5921807  T
Q  401 accttgattacgaggagccatggtgaagaagaatcaatg 439  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5921808 accttgattacgaggagccatggtgaagaagaatcaatg 5921846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 506 - 709
Target Start/End: Original strand, 5921913 - 5922116
Alignment:
Q  506 aagcaacaaatacacagagaacgaagcttgaagacgaagcaatcaagcacaaaaatgaagaatcaagcacagaatcatgaagattcagtgaagaagatga 605  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5921913 aagcaacaaatacatagagaacgaagcttgaagacgaagcaatcaggcacaaaaatgaagaatcaagcacataatcatgaagattcagtgaagaagatga 5922012  T
Q  606 aggagagagggaaaattgcagcggaagttgttagaaaaaatggttatggatcgtaacaaactcccccattggaggagaagaaactgataccatattaaga 705  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  5922013 aggagagagggaaaattgcagcggaagttgttagaaaaaacggttatggatcgtaacaaactccctcattgaaggagaagaaactgataccatatcaaga 5922112  T
Q  706 gaga 709  Q
    ||||    
T  5922113 gaga 5922116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 139 - 373
Target Start/End: Complemental strand, 26968071 - 26967837
Alignment:
Q  139 tttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttcccatgcagaccggttaagatcatcaagatcaggttg 238  Q
    |||||||||| |||| ||||||  |||| |||||||||||||||||||| || ||||  ||||||||  ||   ||||||||||| ||||| ||||||      
T  26968071 tttgagcaatggaatatgaaacagaattaatgagccaagattgaaccaagtgattgctgcgttcccaaacactacggttaagatcttcaaggtcaggtgt 26967972  T
Q  239 ttcaatggagccattggtgaatccaagcttgttcttcgtgcctagagaacgcttcatggaacgattccaagctagataactggaaccatcaagcttagga 338  Q
       |||||| || ||| ||||| |||| |||||||| || || |  ||||||||||||||| |||||||  | | |||  ||||||||||||| || |||    
T  26967971 aggaatggatccgttgttgaattcaagtttgttctttgttcccaatgaacgcttcatggaatgattccacaccacatagttggaaccatcaagtttggga 26967872  T
Q  339 gaaacgattaaagatgaaggaccttcacttggatg 373  Q
    ||||| || |  || |||||||||||||| |||||    
T  26967871 gaaacaatgagggaagaaggaccttcactcggatg 26967837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 753 - 803
Target Start/End: Original strand, 5922332 - 5922382
Alignment:
Q  753 gtttatttgaaatttgaatataattataaggtaatactttcatcaagtatc 803  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  5922332 gtttatttgaaatttgaatataattacaaggtaatactttcatcaaatatc 5922382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 16733009 - 16733057
Alignment:
Q  163 aattgatgagccaagattgaaccaaatggttgcaacgttcccatgcaga 211  Q
    ||||||||||||||||||| |||||||| || || ||||||||||||||    
T  16733009 aattgatgagccaagattgcaccaaatgattacaccgttcccatgcaga 16733057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 277
Target Start/End: Complemental strand, 14813281 - 14813143
Alignment:
Q  139 tttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttcccatgcagaccggttaagatcatcaagatcaggttg 238  Q
    |||||||||| || || |||||  | ||||| |||||||||||||||||||| || || ||||||||||| |  ||||| | ||||||   ||||||       
T  14813281 tttgagcaatggactcagaaacagagttgataagccaagattgaaccaaatgattacagcgttcccatgctgtgcggttcaaatcatcttcatcaggcat 14813182  T
Q  239 ttcaatggagccattggtgaatccaagcttgttcttcgt 277  Q
       |||||| |||||| |||| |||||||||||||||||    
T  14813181 aggaatggaaccattgatgaaaccaagcttgttcttcgt 14813143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 20325710 - 20326145
Alignment:
Q  1 actcaagaacatattttgcaccttgtttcaaattgttaatagaggaacgcaaatttgtaatacgaatgcgatcaaccttagagaaactttcatggagatc 100  Q
    ||||||||||| ||||||||||||||||||| |||||||| || ||||||||||||| ||||||||| |||||| ||||||| |||| |||||| |||||    
T  20325710 actcaagaacagattttgcaccttgtttcaagttgttaatggaagaacgcaaatttgcaatacgaatacgatcagccttagaaaaacgttcatgaagatc 20325809  T
Q  101 ttgccatacctcatatgcaatgacaaagaagacaacaatttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgt 200  Q
    ||||||||||||||| ||| || || | ||||||||| ||||||||||||||||||||||  ||||||| | ||||||||| ||||||   || ||||||    
T  20325810 ttgccatacctcataagcagtgtcataaaagacaacagtttgagcaatagaatctgaaacagaattgattatccaagattgcaccaaaaaattacaacgt 20325909  T
Q  201 tcccatgcagaccggttaagatcatcaagatcaggttgttcaatggagccattggtgaatccaagcttgttcttcgtgcctagagaacgcttcatggaac 300  Q
    ||||||||||| || ||||||||||||||||||||||||||||| ||||||||| | || |||||||||||||| |||||||||||||||||||||||||    
T  20325910 tcccatgcagatcgattaagatcatcaagatcaggttgttcaattgagccattgataaaaccaagcttgttctttgtgcctagagaacgcttcatggaac 20326009  T
Q  301 gattccaagctagataactggaaccatcaagcttaggagaaacgattaaagatgaaggaccttcacttggatgcacgtaaaatggagattcttgatcagg 400  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  20326010 gattccaagctagataattggaaccatcaagtttaggagaaacgattaacgatgaaggaccttcacttggatgaacgtaaaaaggagattcttgatcagg 20326109  T
Q  401 accttgattacgaggagccatggtgaagaagaatca 436  Q
    ||||||||||||||||| ||||||||||||||||||    
T  20326110 accttgattacgaggaggcatggtgaagaagaatca 20326145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 505 - 725
Target Start/End: Original strand, 20326168 - 20326387
Alignment:
Q  505 gaagcaacaaatacacagagaacgaagcttgaagacgaagcaatcaagcacaaaaatga-agaatcaagcacagaatcatgaagattcagtgaagaagat 603  Q
    |||||||||||| | |||| ||| ||||||||||||||||||||||||||||||||  | |||||||| |||||||||||||||||||| ||||||||||    
T  20326168 gaagcaacaaattctcagaaaacaaagcttgaagacgaagcaatcaagcacaaaaaaaagagaatcaatcacagaatcatgaagattcaatgaagaagat 20326267  T
Q  604 gaaggagagagggaaaattgcagcggaagttgttagaaaaaatggttatggatcgtaacaaactcccccattggaggagaagaaactgataccatattaa 703  Q
    || ||| | ||| ||||||||||||||||| |||||||||  | |||||||||| |||||||||| || |||| |||||||||||||||||||||||||     
T  20326268 gatggaaaaaggaaaaattgcagcggaagtagttagaaaaggttgttatggatcttaacaaactctccaattgaaggagaagaaactgataccatatta- 20326366  T
Q  704 gagagaaagaatatgaatgaaa 725  Q
     |||||||||||||||||||||    
T  20326367 -agagaaagaatatgaatgaaa 20326387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 29125372 - 29125294
Alignment:
Q  132 acaacaatttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttcccatgcag 210  Q
    |||||| |||| ||||| ||||| |||||| | ||||| |||||||| || |||||||| ||||| |||||||||||||    
T  29125372 acaacagtttgtgcaattgaatcagaaacggagttgataagccaagactgcaccaaatgattgcagcgttcccatgcag 29125294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 669 - 730
Target Start/End: Original strand, 36164903 - 36164964
Alignment:
Q  669 ccccattggaggagaagaaactgataccatattaagagagaaagaatatgaatgaaaagtgt 730  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36164903 cccccttgaaggagaagaaactgataccatattaagagagaaagaatatgaatgaaaagtgt 36164964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 188179 - 188136
Alignment:
Q  165 ttgatgagccaagattgaaccaaatggttgcaacgttcccatgc 208  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||    
T  188179 ttgataagccaagattgaaccaaatgattgcatcgttcccatgc 188136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 205
Target Start/End: Complemental strand, 52776272 - 52776100
Alignment:
Q  33 ttgttaatagaggaacgcaaatttgtaatacgaatgcgatcaaccttagagaaactttcatggagatcttgccatacctcatatgcaatgacaaagaaga 132  Q
    |||||||| | |||||| | ||| | ||| |||||||||||||| ||||| || ||||| || | ||| ||||| || ||| | ||| |  || |||| |    
T  52776272 ttgttaatggtggaacgaagattggcaatgcgaatgcgatcaactttagaaaatctttcttgcaaatcatgccaaacttcaaaagcagtatcatagaata 52776173  T
Q  133 caacaatttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttccca 205  Q
    | | | |||||||||| ||||| |||||  |||| |||||||||||||| |||||||||||||| ||||||||    
T  52776172 cgatagtttgagcaattgaatcagaaactgaattaatgagccaagattgtaccaaatggttgcatcgttccca 52776100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 2358213 - 2358144
Alignment:
Q  139 tttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttcccatgc 208  Q
    |||||||||| || || |||||  | ||||| |||||||||||||||||||| || || |||||||||||    
T  2358213 tttgagcaatggactcagaaacagagttgataagccaagattgaaccaaatgattacagcgttcccatgc 2358144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 19588505 - 19588571
Alignment:
Q  139 tttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttccca 205  Q
    |||||||||| ||||| |||||| |||| || ||||||||||| |||||||||||||| ||||||||    
T  19588505 tttgagcaattgaatcagaaacggaattaataagccaagattgtaccaaatggttgcatcgttccca 19588571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 205
Target Start/End: Complemental strand, 12283892 - 12283720
Alignment:
Q  33 ttgttaatagaggaacgcaaatttgtaatacgaatgcgatcaaccttagagaaactttcatggagatcttgccatacctcatatgcaatgacaaagaaga 132  Q
    |||||||| | |||||| | ||| | ||| |||||||||||||| ||||| || ||||| || | ||| ||||| || ||| | ||| |  || |||| |    
T  12283892 ttgttaatggtggaacgaagattggcaatgcgaatgcgatcaactttagaaaatctttcttgcaaatcatgccaaacttcaaaagcagtatcatagaata 12283793  T
Q  133 caacaatttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttccca 205  Q
    | | | |||||||||| |||||  ||||  |||| |||||||||||||| |||||||||||||| ||||||||    
T  12283792 cgatagtttgagcaattgaatcaaaaactgaattaatgagccaagattgtaccaaatggttgcatcgttccca 12283720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 307
Target Start/End: Original strand, 34503758 - 34503900
Alignment:
Q  165 ttgatgagccaagattgaaccaaatggttgcaacgttcccatgcagaccggttaagatcatcaagatcaggttgttcaatggagccattggtgaatccaa 264  Q
    ||||| |||||| |||||||||| || || ||| ||||| | |||   || |||||||| ||||||||||||     |||||| |||||| |||||||||    
T  34503758 ttgataagccaatattgaaccaagtgattacaatgttcctaagcattgcgattaagatcttcaagatcaggtgtgggaatggaaccattgatgaatccaa 34503857  T
Q  265 gcttgttcttcgtgcctagagaacgcttcatggaacgattcca 307  Q
      ||||||||||| | || || ||||||||||||| |||||||    
T  34503858 ttttgttcttcgttcttaaagcacgcttcatggaatgattcca 34503900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 205
Target Start/End: Complemental strand, 9601 - 9429
Alignment:
Q  33 ttgttaatagaggaacgcaaatttgtaatacgaatgcgatcaaccttagagaaactttcatggagatcttgccatacctcatatgcaatgacaaagaaga 132  Q
    |||||||| | |||||| | ||| | ||| |||||||||||||| ||||| || ||||| || | ||| ||||| || ||| | ||| |  || |||| |    
T  9601 ttgttaatggtggaacgaagattggcaatgcgaatgcgatcaactttagaaaatctttcttgcaaatcatgccaaacttcaaaagcagtatcatagaata 9502  T
Q  133 caacaatttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttccca 205  Q
    | | | |||||||||| ||||| || ||  |||| |||||||||||||| |||||||||||||| ||||||||    
T  9501 cgatagtttgagcaattgaatcagagactgaattaatgagccaagattgtaccaaatggttgcatcgttccca 9429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 205
Target Start/End: Original strand, 22178630 - 22178802
Alignment:
Q  33 ttgttaatagaggaacgcaaatttgtaatacgaatgcgatcaaccttagagaaactttcatggagatcttgccatacctcatatgcaatgacaaagaaga 132  Q
    |||||||| | |||||| | ||| | ||| |||||||||||||| ||||| || ||||| || | ||| ||||| || ||| | ||| |  || |||| |    
T  22178630 ttgttaatggtggaacgaagattggcaatgcgaatgcgatcaactttagaaaatctttcttgcaaatcatgccaaacttcaaaagcagtatcatagaata 22178729  T
Q  133 caacaatttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttccca 205  Q
    | | | |||||||||| ||||| || ||  |||| |||||||||||||| |||||||||||||| ||||||||    
T  22178730 cgatagtttgagcaattgaatcagagactgaattaatgagccaagattgtaccaaatggttgcatcgttccca 22178802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 10636579 - 10636536
Alignment:
Q  165 ttgatgagccaagattgaaccaaatggttgcaacgttcccatgc 208  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||    
T  10636579 ttgataagccaagattgaaccaaatgattgcatcgttcccatgc 10636536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 277
Target Start/End: Complemental strand, 5237823 - 5237685
Alignment:
Q  139 tttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttcccatgcagaccggttaagatcatcaagatcaggttg 238  Q
    |||||||||| || || |||||  | ||||| |||||||||||||||||||| || || ||||||||||| |  ||||| | ||||||   ||||||       
T  5237823 tttgagcaatggactcagaaacagagttgataagccaagattgaaccaaatgattacagcgttcccatgctgtgcggttcaaatcatcttcatcaggcat 5237724  T
Q  239 ttcaatggagccattggtgaatccaagcttgttcttcgt 277  Q
       |||||| |||||| |||| |||||||||||||||||    
T  5237723 aggaatggaaccattgatgaaaccaagcttgttcttcgt 5237685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 205
Target Start/End: Complemental strand, 29498013 - 29497877
Alignment:
Q  69 cgatcaaccttagagaaactttcatggagatcttgccatacctcatatgcaatgacaaagaagacaacaatttgagcaatagaatctgaaacgaaattga 168  Q
    |||||||||||||| || ||||| || ||||| ||||| || ||| | ||| |  || |||| |||| | ||||||||||  |||| ||||| |||||      
T  29498013 cgatcaaccttagaaaatctttcttgcagatcatgccaaacatcaaaggcagtatcatagaaaacaatagtttgagcaatgaaatcagaaacaaaattag 29497914  T
Q  169 tgagccaagattgaaccaaatggttgcaacgttccca 205  Q
    | ||||||||||| |||| ||||||||| ||||||||    
T  29497913 taagccaagattgtaccacatggttgcatcgttccca 29497877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 8309925 - 8309856
Alignment:
Q  141 tgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttcccatgcag 210  Q
    |||| ||| ||||| ||||| || || ||||||||||||||||| | ||| ||||| |||||||||||||    
T  8309925 tgagaaattgaatcagaaacaaagttaatgagccaagattgaacgagatgattgcaccgttcccatgcag 8309856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University