View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_high_20 (Length: 342)
Name: NF7814_high_20
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 5774645 - 5774336
Alignment:
| Q |
19 |
atcaaattctgtggtggttgtttatggttgaggtaactgttgttagtgtgtgcgtgcttgcaggaggctgaattgctggttaatgtaagatatcacaagc |
118 |
Q |
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| T |
5774645 |
atcaaattctgtggtggttgtttatggttgaggtaactgttgttagtgtatgcgtgcttgcaggaggctgaattgctggttaatgtaagatatcacaagc |
5774546 |
T |
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| Q |
119 |
ttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttatnnnnnnnnnttgtg |
218 |
Q |
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| T |
5774545 |
ttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttataaaaaggaattgtg |
5774446 |
T |
|
| Q |
219 |
gaaattttgtgttatttagaatgtaactaatcgaatgagtaaagttatatatataatagtatttcacctaggcatttgaaaaatttctgcacacgcacat |
318 |
Q |
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| T |
5774445 |
gaaattttgtgttatttagaatgtaactaatcgaatgagtaaagt----tatataatagtatttcacctaggcatttgaaaaatttctgcacacacacat |
5774350 |
T |
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| Q |
319 |
gtgcttcatctctg |
332 |
Q |
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| T |
5774349 |
gtgcttcatctctg |
5774336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 5768374 - 5768189
Alignment:
| Q |
19 |
atcaaattctgtggtggttgtttatggttgaggtaactgttgttagtgtgtgcgtgcttgcaggaggctgaattgctggttaatgtaagatatcacaagc |
118 |
Q |
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| T |
5768374 |
atcaaattttgtggtggttgttaatggttgaggtaaccgttgttagtgtatgcgttcttgaaggaggctgaattgctggttaacgtaagatatcacgagc |
5768275 |
T |
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| Q |
119 |
ttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttat |
204 |
Q |
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| T |
5768274 |
ttgtgccagaacatcaggtgctgaccgacaatgagaagaaaaccttactcgagagatacaccgttaaagaaactcaggtcagttat |
5768189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 465679 - 465800
Alignment:
| Q |
80 |
aggaggctgaattgctggttaatgtaagatatcacaagcttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacac |
179 |
Q |
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| T |
465679 |
aggaggcagagttgctggttaatataaaagagcatgtgcttgtgcctgaacatcagattctcaatgacaccgagaagaaaaccttgcttgagagatacac |
465778 |
T |
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| Q |
180 |
tgttaaagaaactcaggtcagt |
201 |
Q |
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||| || ||||||||||||||| |
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| T |
465779 |
tgtcaaggaaactcaggtcagt |
465800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 259
Target Start/End: Complemental strand, 5768171 - 5768137
Alignment:
| Q |
225 |
ttgtgttatttagaatgtaactaatcgaatgagta |
259 |
Q |
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| T |
5768171 |
ttgtgttatttagaatgtgactaatcgaatgagta |
5768137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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