View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_high_3 (Length: 556)
Name: NF7814_high_3
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 8 - 538
Target Start/End: Complemental strand, 47590524 - 47589993
Alignment:
| Q |
8 |
tcgtgtttaagaaactggt-ctgatggcattggaagacaaagaagtgaagagtgttttgagatttgatagaaaatcattgttcattggttcattgattga |
106 |
Q |
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| T |
47590524 |
tcgtctttaagaaactggttctgatggcattggaagacaaagaagtgaagaatgttttgagatttgatagaaaatcattgttcacgggttcattgattga |
47590425 |
T |
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| Q |
107 |
acagttgtgggaaagataagccggatgttgtgagtattttgaatcgattgtattggaagctggaacgagttcttgtggtgttggagcattactggggcga |
206 |
Q |
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| T |
47590424 |
acagttgtgggaaagataagcaggatgttgtgagtattttgaatcgattgtattggaagctggaacgagttcttgtggtgttggagcattactggggcga |
47590325 |
T |
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| Q |
207 |
tagaaagggtacacatcatatctgatgtaacaactgtaagtttccgagtttgctaccattgcattgctaagtttacaagtcttaagaacccctgttatgg |
306 |
Q |
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| T |
47590324 |
tagaaagggtacacatcatatctgatgtaacaactgtaagtttccgagtttgctaccattgcattgctaagtttacaagtcttaagaacccctgttatgg |
47590225 |
T |
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| Q |
307 |
ttgtattcagacatttccgacaatcttttggtgacaggtctggtgtgcactgagcttgaaaataaagggtctgaaatccagatactgttgcttcctttgt |
406 |
Q |
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| T |
47590224 |
ttatattcagacatttccgacaatcttttggtgacaggtctggtgtgcactgagcttgaaaataaagggtctgaaatccagatactgttgcttcctttgt |
47590125 |
T |
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| Q |
407 |
ggcatacttctggaagccaatagagaagttggctgcctcgtctgccactccattcaaagtttcgtaaactaaacgctcaaatattgccttgttggaaaca |
506 |
Q |
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| T |
47590124 |
ggcatacttctggaagccaatagagaagttggctgcctcgtctgccactccattcaaagttttgtaaactaaacgctcaaatattgccttgttggaaaca |
47590025 |
T |
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| Q |
507 |
ttaacatggtggcatgagatagaaggtgaact |
538 |
Q |
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| T |
47590024 |
ttaacatggtggcatgagatagaaggtgaact |
47589993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 68 - 151
Target Start/End: Complemental strand, 30437693 - 30437610
Alignment:
| Q |
68 |
atttgatagaaaatcattgttcattggttcattgattgaacagttgtgggaaagataagccggatgttgtgagtattttgaatc |
151 |
Q |
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| T |
30437693 |
atttgataggaaattattgttcaaagtttcattgcttgaacatttgcaggaaagataagcaggatgttgcgggtattttgaatc |
30437610 |
T |
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