View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_high_33 (Length: 244)
Name: NF7814_high_33
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 301752 - 301658
Alignment:
| Q |
133 |
cagaccctacaatgtcctatttaatgcaccttt-actataagaatgctcatgaaagagatttgtctaaccttttggtcatgtgcaccaaccaaac |
226 |
Q |
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| T |
301752 |
cagaccctacaatgtcctatttaatgcaccttttactataagaatgctcatgaaagagatttgtctaaccttttggtcatgtgcaccaaccaaac |
301658 |
T |
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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 301844 - 301757
Alignment:
| Q |
4 |
ttcaatattaattatattatgtaacaatgatttatgtattaaatgttaaattgttttttgtt-----gtagttgattggtttaattaa |
86 |
Q |
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| T |
301844 |
ttcaatattaaatatattacgtaacacagatttatgtattaaatattaaattgttttttgtttttttgttgttgattggtttaattaa |
301757 |
T |
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