View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7814_high_37 (Length: 240)
Name: NF7814_high_37
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_high_37 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 11349734 - 11349955
Alignment:
| Q |
4 |
ttcaatacacgtctagaaaattcaatcaaaacgccatataatacaaatcacaagtgaataaaatgaacgatccattaaaccatcacatcacacaaattaa |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11349734 |
ttcaatacacgtctagaaaattcaatcaaaacgtcatataatacaaatcacaagtgaataaaatgaacgatgcattaaaccatcacatcacacaaattaa |
11349833 |
T |
|
| Q |
104 |
gatattcatcaaagaaagcttaaaatgtactcacatatgatgatgttttcaaccaacaattccttcaaaagggaagaaaaagaagaaactaaacgattca |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11349834 |
gatattcatcaaagaaagcttaaaatgtactcacatatgatgatgttttcaaccaacaattccttcaaaaggaaagaaaaagaagaaactaaacgattca |
11349933 |
T |
|
| Q |
204 |
aaattaaatgcaaggatgaaaa |
225 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
11349934 |
aaagtaaatgcaaggatgaaaa |
11349955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University