View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_high_38 (Length: 240)
Name: NF7814_high_38
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 40113020 - 40113250
Alignment:
| Q |
1 |
cctccccagtctgcatctgtaaaggcaagaagattgaatgaggatggtttctttaagagtatgccaaagttaatggttcccttaatgtagcgaagtagcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40113020 |
cctccccagtctgcatctgtaaaggcaagaagattgaatgaggatggtttctttaagagtatgccaaagttaatggttcccttaatgtagcgaagtagcc |
40113119 |
T |
|
| Q |
101 |
gctttaaatgttgaagatgaagggatgtaggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggccgtgtcagattgagatactg |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40113120 |
gctttaaatgttgaagatgaagggatataggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggccgtgtcagattgagatactg |
40113219 |
T |
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| Q |
201 |
aaggaagccaagaatttttctgtagtgtgtg |
231 |
Q |
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|||| |||||||||||||||||||||||||| |
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| T |
40113220 |
aagggagccaagaatttttctgtagtgtgtg |
40113250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 2662465 - 2662365
Alignment:
| Q |
93 |
aagtagccgctttaaatgttgaagatgaagggatgtaggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggccgtgtcagattg |
192 |
Q |
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| T |
2662465 |
aagtagccgtttgagatgttgaaaatggagacttgtaggcttatgcatgaattgagagagtttgttgatggcaaaggaaaggtcaggccttgtgagattg |
2662366 |
T |
|
| Q |
193 |
a |
193 |
Q |
| |
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| |
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| T |
2662365 |
a |
2662365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 9004961 - 9005019
Alignment:
| Q |
127 |
gtaggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggccgtgt |
185 |
Q |
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| T |
9004961 |
gtaggtttgtgcatgaattgagagagtttgttgacagcaaatgagacatcgggccgtgt |
9005019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 6407213 - 6406983
Alignment:
| Q |
1 |
cctccccagtctgcatctgtaaaggcaagaagattgaatgaggatggtttctttaagagtatgccaaagttaatggttcccttaatgtagcgaagtagcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6407213 |
cctccccagtctgcatctgtaaaggcaagaagattgaatgaggatggtttctttaagagtatgccaaagttaatggttcccttaatgtagcgaagtagcc |
6407114 |
T |
|
| Q |
101 |
gctttaaatgttgaagatgaagggatgtaggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggccgtgtcagattgagatactg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
6407113 |
gctttaaatgttgaagatgaagggatgtaggtttatgcaagaattgggagagcttgttgattgcaaatgagagatcaggtcgtgtcaggttgagatactg |
6407014 |
T |
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| Q |
201 |
aaggaagccaagaatttttctgtagtgtgtg |
231 |
Q |
| |
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|||| |||||||||||||||||||||||||| |
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| T |
6407013 |
aagggagccaagaatttttctgtagtgtgtg |
6406983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 178
Target Start/End: Original strand, 654148 - 654322
Alignment:
| Q |
4 |
ccccagtctgcatctgtaaaggcaagaagattgaatgaggatggtttctttaagagtatgccaaagttaatggttcccttaatgtagcgaagtagccgct |
103 |
Q |
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|||||||||||||| || || ||| ||||| ||| || ||||||| ||| | | |||||||| |||||||| |||| | || |||||||| | || |
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| T |
654148 |
ccccagtctgcatccgtgaaagcataaagatggaaggatgatggttgcttcagaaaaatgccaaaattaatggtagcctttagataacgaagtagtctct |
654247 |
T |
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| Q |
104 |
ttaaatgttgaagatgaagggatgtaggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcag |
178 |
Q |
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||| |||||| |||||||| ||||| ||||| | ||||||||| || ||||||||||| |||| ||| ||||||| |
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| T |
654248 |
ttagatgttgcagatgaagtgatgttggtttgtacatgaattgagaaagcttgttgatggcaattgaaagatcag |
654322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 3019532 - 3019431
Alignment:
| Q |
93 |
aagtagccgctttaaatgttgaagatgaagggatgtaggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggccgtgtcagattg |
192 |
Q |
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||||||||| || | |||||||| ||| || |||||| |||||||||||||| ||||| |||||||| ||||| || || ||||||| ||| |||||| |
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| T |
3019532 |
aagtagccgtttgagatgttgaaaatggagacttgtaggcttatgcatgaattgagagagtttgttgatggcaaaggaaaggtcaggccttgtgagattg |
3019433 |
T |
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| Q |
193 |
ag |
194 |
Q |
| |
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|| |
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| T |
3019432 |
ag |
3019431 |
T |
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