View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_high_4 (Length: 523)
Name: NF7814_high_4
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 14 - 514
Target Start/End: Complemental strand, 17913100 - 17912600
Alignment:
| Q |
14 |
caaataattcaatgtatatgaaatccaatttcatgtaggtataggatctaggagatttcaaagggaaagtgagatgttgcaaatggaatggacaagtctc |
113 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17913100 |
caaataattctatgtatatgaaatccaatttcatataggtataggatgtaggagatttcaaagggaaagtgagatgttgcaaatggaatggacaagtctc |
17913001 |
T |
|
| Q |
114 |
ctaactcaatcaaacttcatatgatctgtaacacaatattggccaaagaacttcccacatgccctatgggccctatctcacatgcagaaccaatgcagtc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17913000 |
ctaactcaatcaaacttcatatgatctgtaacacaatattggccaaagaacttcccacatgccctatgggccctatctcacatgcagaaccaatgcagtc |
17912901 |
T |
|
| Q |
214 |
tttattacaatctaaccatgtgcattgagaacacttatcactgtctctctttagcactgtccattgctttctccgcaggcatttactatatgcctcatcc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17912900 |
tttattacaatctaaccatgtgcattgagaacacttatcactgtctctctttagcactgtccattgctttctccgcaggcatttactatatgcctcatcc |
17912801 |
T |
|
| Q |
314 |
tcacaagagttttgagggtgcagtacattatctagccttggttaattaaagaaagaatgtgacattttaacaaaatctaatttggttgagtcgtttattt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17912800 |
tcacaagagttttgagggtgcagtacattatctagccttggttaattaaagaaagaatgtgacattttaacaaaatctaatttggttgagtcgtttattt |
17912701 |
T |
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| Q |
414 |
aacttttcattccattcagaatttggattgtctgtaatcaataattaccacatatttaagcaatcgatgcattggtggtcggttgatcatatagttcatc |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||| |||||||| ||||||||||| |
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| T |
17912700 |
aacttttcattccattcagaatttggattgtctgtaatcaataatcgccacatatttaaacaatcgatgaattggtggccggttgattgtatagttcatc |
17912601 |
T |
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| Q |
514 |
t |
514 |
Q |
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| T |
17912600 |
t |
17912600 |
T |
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