View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7814_low_10 (Length: 457)

Name: NF7814_low_10
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7814_low_10
NF7814_low_10
[»] chr5 (6 HSPs)
chr5 (10-442)||(2210496-2210928)
chr5 (223-441)||(2198282-2198500)
chr5 (10-68)||(2198575-2198633)
chr5 (87-116)||(37455439-37455468)
chr5 (116-144)||(34384702-34384730)
chr5 (87-115)||(41330455-41330483)
[»] chr8 (2 HSPs)
chr8 (87-144)||(1961372-1961427)
chr8 (87-115)||(16983484-16983512)
[»] chr1 (2 HSPs)
chr1 (115-144)||(22540504-22540533)
chr1 (87-115)||(30678973-30679001)
[»] chr7 (3 HSPs)
chr7 (87-115)||(31502526-31502554)
chr7 (87-115)||(44350864-44350892)
chr7 (87-115)||(46517381-46517409)
[»] chr4 (2 HSPs)
chr4 (116-144)||(19447273-19447301)
chr4 (87-115)||(50164485-50164513)
[»] chr3 (1 HSPs)
chr3 (87-115)||(29388656-29388684)
[»] chr2 (1 HSPs)
chr2 (116-152)||(38464304-38464340)


Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 442
Target Start/End: Complemental strand, 2210928 - 2210496
Alignment:
Q  10 cagagagctatgatttgcaaattagcataaaaattcaacgaaaattaaaataatttaaataaacagaatatgatctagttcaattttcaaagtgtagact 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2210928 cagagagctatgatttgcaaattagcataaaaattcaacgaaaattaaaataatttaaataaacagaatatgatctagttcaattttcaaagtgtagact 2210829  T
Q  110 caca--atagtattaaagagagtgttcaaaagagagtatagctagtcttactcaatctactaattatgtacatagaa-gaagnnnnnnnngaaatgaaga 206  Q
    ||||  ||||||||||||||||            ||| ||||||||||||||||||||||||||||||||||||||| |||         ||||||||||    
T  2210828 cacacaatagtattaaagagag------------agtgtagctagtcttactcaatctactaattatgtacatagaaagaa-----aaatgaaatgaaga 2210746  T
Q  207 ttaaataaggaacgaataaattcaactcaagtcatgacagtatgaaatcgacatggaaaattga---aatgaacattgatttgcatcgaaa--------- 294  Q
    ||||||||||||||||||| ||||||||||||||| ||| ||| ||||  ||||  ||||||||   |||||| || ||||||||||||||             
T  2210745 ttaaataaggaacgaataacttcaactcaagtcatcacactatcaaattcacat--aaaattgatgaaatgaatatagatttgcatcgaaataaagatga 2210648  T
Q  295 ----ctaaccgaaaaacatcccagcaactatcaagaccaggaataggaggaggaaaaccatctttagcgaagatgctacgataagcaggtcctcttgaag 390  Q
        ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2210647 aaaactaaccgaaaaacatcccagcaactatcaagaccaagaataggaggaggaaaaccatctttagcgaagatgctacgatacgcaggtcctcttgaag 2210548  T
Q  391 gtttatcctccgttgctgccttcgctttttcaacctcaatgatgaatctttt 442  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  2210547 gtttatcttccgttgcttccttcgctttttcaacctcaatgatgaatctttt 2210496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 223 - 441
Target Start/End: Complemental strand, 2198500 - 2198282
Alignment:
Q  223 taaattcaactcaagtcatgacagtatgaaatcgacatggaaaattgaaatgaacattgatttgcatcgaaactaaccgaaaaacatcccagcaactatc 322  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2198500 taaattcaactcaagtcatgacactatgaaatcgacatggaaaattgaaatgaacattgatttgcatcgaaactaaccgaaaaacatcccagcaactatc 2198401  T
Q  323 aagaccaggaataggaggaggaaaaccatctttagcgaagatgctacgataagcaggtcctcttgaaggtttatcctccgttgctgccttcgctttttca 422  Q
    |||||||||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2198400 aagaccaggaataggaggaggaaatccatccttagcgaagatactgcgatacgcaggtcctcttgaaggtttatcctccgttgctgccttcgctttttca 2198301  T
Q  423 acctcaatgatgaatcttt 441  Q
    |||||||||||||||||||    
T  2198300 acctcaatgatgaatcttt 2198282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 2198633 - 2198575
Alignment:
Q  10 cagagagctatgatttgcaaattagcataaaaattcaacgaaaattaaaataatttaaa 68  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||||||||| ||| |||||    
T  2198633 cagagagctctgatttgaaaattagcataaaaattaaacgaaaattaaattaaattaaa 2198575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 116
Target Start/End: Original strand, 37455439 - 37455468
Alignment:
Q  87 gttcaattttcaaagtgtagactcacaata 116  Q
    ||||||||||||||||||||||||||||||    
T  37455439 gttcaattttcaaagtgtagactcacaata 37455468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 144
Target Start/End: Complemental strand, 34384730 - 34384702
Alignment:
Q  116 agtattaaagagagtgttcaaaagagagt 144  Q
    |||||||||||||||||||||||||||||    
T  34384730 agtattaaagagagtgttcaaaagagagt 34384702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 41330483 - 41330455
Alignment:
Q  87 gttcaattttcaaagtgtagactcacaat 115  Q
    |||||||||||||||||||||||||||||    
T  41330483 gttcaattttcaaagtgtagactcacaat 41330455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 1961372 - 1961427
Alignment:
Q  87 gttcaattttcaaagtgtagactcacaatagtattaaagagagtgttcaaaagagagt 144  Q
    ||||||||||||||||||||||  ||||||  |||| |||||||||||||||||||||    
T  1961372 gttcaattttcaaagtgtagaccaacaata--attagagagagtgttcaaaagagagt 1961427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 16983484 - 16983512
Alignment:
Q  87 gttcaattttcaaagtgtagactcacaat 115  Q
    |||||||||||||||||||||||||||||    
T  16983484 gttcaattttcaaagtgtagactcacaat 16983512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 22540504 - 22540533
Alignment:
Q  115 tagtattaaagagagtgttcaaaagagagt 144  Q
    ||||||||||||||||||||||||||||||    
T  22540504 tagtattaaagagagtgttcaaaagagagt 22540533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 30679001 - 30678973
Alignment:
Q  87 gttcaattttcaaagtgtagactcacaat 115  Q
    |||||||||||||||||||||||||||||    
T  30679001 gttcaattttcaaagtgtagactcacaat 30678973  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 31502554 - 31502526
Alignment:
Q  87 gttcaattttcaaagtgtagactcacaat 115  Q
    |||||||||||||||||||||||||||||    
T  31502554 gttcaattttcaaagtgtagactcacaat 31502526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 44350892 - 44350864
Alignment:
Q  87 gttcaattttcaaagtgtagactcacaat 115  Q
    |||||||||||||||||||||||||||||    
T  44350892 gttcaattttcaaagtgtagactcacaat 44350864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 46517381 - 46517409
Alignment:
Q  87 gttcaattttcaaagtgtagactcacaat 115  Q
    |||||||||||||||||||||||||||||    
T  46517381 gttcaattttcaaagtgtagactcacaat 46517409  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 144
Target Start/End: Original strand, 19447273 - 19447301
Alignment:
Q  116 agtattaaagagagtgttcaaaagagagt 144  Q
    |||||||||||||||||||||||||||||    
T  19447273 agtattaaagagagtgttcaaaagagagt 19447301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 50164485 - 50164513
Alignment:
Q  87 gttcaattttcaaagtgtagactcacaat 115  Q
    |||||||||||||||||||||||||||||    
T  50164485 gttcaattttcaaagtgtagactcacaat 50164513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 29388684 - 29388656
Alignment:
Q  87 gttcaattttcaaagtgtagactcacaat 115  Q
    |||||||||||||||||||||||||||||    
T  29388684 gttcaattttcaaagtgtagactcacaat 29388656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 38464304 - 38464340
Alignment:
Q  116 agtattaaagagagtgttcaaaagagagtatagctag 152  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  38464304 agtattagagagagtgttcaaaagagagtattgctag 38464340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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