View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_low_11 (Length: 447)
Name: NF7814_low_11
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 433
Target Start/End: Original strand, 40143766 - 40144170
Alignment:
| Q |
19 |
acgaagttcggtaatgctgaacgttattatgtgtattgtgaatgaaaataactcatctcacaaaataaataaagttaaggtctaaaacgagtttataaaa |
118 |
Q |
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| T |
40143766 |
acgaagttcggtaatactgaatgttattatgtgtattgtgaatgagaataactcatctcacaaaataaataaagttaaggtctaaaacgagtttataaaa |
40143865 |
T |
|
| Q |
119 |
gagtaatacctctcgtctaatacaataaatttttataaaaataaactataaattcaat--nnnnnnnnnttactgaaactttaaaagtgttataggaaaa |
216 |
Q |
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| T |
40143866 |
gagtaatacctctcgtctaatacaataaatttttataaaaataaactatatattcaataaaaaaaaaaattaatgaaactttaaaagtgttataggaaaa |
40143965 |
T |
|
| Q |
217 |
tgataaataacttaataaaagtagcaaagtttagtgatgttgttagcacgtgt-aaaaaagacaaagttaaaaaggatatgaacaagtaagtaataatag |
315 |
Q |
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| T |
40143966 |
tgataaataacttaataaaagtagcaaagtttagtgatgttgttagcacgtgtaaaaaaagacaaagttaaaaaggatatgaacaagta----------- |
40144054 |
T |
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| Q |
316 |
tattataggaaaaggtaaaaagcattaaggtggcaccaaaacagttaaagtatatttatccataacaagaataaatgactttttaaacactttgtggacg |
415 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40144055 |
-ataataggaaaaggtaaaaagcattaaggtggcaccaaaacagttaaagtatatttatccataacaagaataaatgac-ttttaaacactttgtggacg |
40144152 |
T |
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| Q |
416 |
taattccaaaacaccaaa |
433 |
Q |
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| T |
40144153 |
taattccaaaacaccaaa |
40144170 |
T |
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